View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6267_low_1 (Length: 993)
Name: NF6267_low_1
Description: NF6267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6267_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 1e-62; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 656 - 798
Target Start/End: Complemental strand, 27732978 - 27732836
Alignment:
| Q |
656 |
tttgaatctgatggattggctgctaagcttgctagtgctgacagctctttacttattggatcatatctggatgtacctattggacaagaaattaaaaatg |
755 |
Q |
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| T |
27732978 |
tttgaatctgatggattggctgctaagctggcaagtgccgacagctctttacttattggatcatatctggatgtacctattggacaagaaattaaaaatg |
27732879 |
T |
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| Q |
756 |
caggtaagcttttgtacatgatattattaaattattaaaatac |
798 |
Q |
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| T |
27732878 |
caggtaagcttttgtccgtgatattattaaattattaaaatac |
27732836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 484 - 599
Target Start/End: Original strand, 27733094 - 27733209
Alignment:
| Q |
484 |
atgttaatctgttcagaacttcctttcaacttcccaaagtaaaaatctctccccacttcatccaccttctcttttatataagccctttcatcaccgattt |
583 |
Q |
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| T |
27733094 |
atgttattctgttcagaacttccttgcaacttccccaagtaaaaagctctccccacttcatccacctgctcttttatataagcccttgcatcaccaattt |
27733193 |
T |
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| Q |
584 |
ctagcttactcttttc |
599 |
Q |
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| T |
27733194 |
ctggctttctcttttc |
27733209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 402 - 482
Target Start/End: Original strand, 27732986 - 27733066
Alignment:
| Q |
402 |
ctccaattaatagtcaacagcttatcttctgagttaattttcacaggaggaagccttggataatcttccttctgcttctcc |
482 |
Q |
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| T |
27732986 |
ctccaattaatagtcaacggcttatcttctgacttaattttcacaggaggaagccttggatactcttccttctgcttctcc |
27733066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 222 - 325
Target Start/End: Complemental strand, 27733731 - 27733627
Alignment:
| Q |
222 |
attaatggtcctgtggagccttaccaaactgacggtggaagcaaggctagtaatacttcgaatg-atcaatatctcagcaataaaaaactcaaatgagtg |
320 |
Q |
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| T |
27733731 |
attaatggtcctgcagagccttgccaaaatgacggtgcaagcaaggctagtaatacttcgaaggcctcaatatcccagcaatcgaaaactcaaatgagtg |
27733632 |
T |
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| Q |
321 |
aagcc |
325 |
Q |
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| T |
27733631 |
aagcc |
27733627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 133
Target Start/End: Complemental strand, 27701509 - 27701480
Alignment:
| Q |
104 |
gccaccgtcctccgacgaaccaaaatcttc |
133 |
Q |
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| T |
27701509 |
gccaccgtcctccgacgaaccaaaatcttc |
27701480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 797 - 838
Target Start/End: Complemental strand, 27732800 - 27732759
Alignment:
| Q |
797 |
acctttcgaggctcaaattactgtctgatttgttggtttgtc |
838 |
Q |
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| T |
27732800 |
acctttgggggctcaaattactgtctgatttgttgctttgtc |
27732759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 288 - 361
Target Start/End: Complemental strand, 27733586 - 27733513
Alignment:
| Q |
288 |
caatatctcagcaataaaaaactcaaatgagtgaagccattggcacagctaacagtaatgtaaaaactgaggag |
361 |
Q |
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| T |
27733586 |
caatatcacagcaatcgaaagctcaaactagtgaagcctttgacgcagccaacagtaatgtaaaaactgcggag |
27733513 |
T |
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