View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6267_low_2 (Length: 623)
Name: NF6267_low_2
Description: NF6267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6267_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 577; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 12 - 605
Target Start/End: Original strand, 49738898 - 49739493
Alignment:
| Q |
12 |
atgaaccatggagaattattaaatgaaaacaagag--tttgaaaaccaaattgttcccctaaaaaataaaatcaattccggttgaagaggagctagttgt |
109 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
49738898 |
atgaaccatggagaattattaaatgaaaacaagagagtttgaaaaccaaattgttcccctaaaaaataaaatcaattccggttgaaggggagctagttgt |
49738997 |
T |
|
| Q |
110 |
ttgttaccttggaaactagatgaactacttggttggtgttaacatttcctccaaaagcatcaatagcatctccaataattatagtcagtaaaggcataga |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49738998 |
ttgttaccttggaaactagatgaactacttggttggtgttaacatttcctccaaaagcatcaatagcatctccaataattatagtcagtaaaggcataga |
49739097 |
T |
|
| Q |
210 |
gactccattcccaacagcaccgatagtcccaacaaacatcaataaataatcccaagagtctgcaaatgagaaaagcttgtaaaagggtactgttttcttg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49739098 |
gactccattcccaacagcaccgatagtcccaacaaacatcaataaataatcccaagagtctgcaaatgagaaaagcttgtaaaagggtactgttttcttg |
49739197 |
T |
|
| Q |
310 |
ctttgatccttcaccttgttcttcttggaatcttggcgcatgtcagccatttcttggccattttcatgacctgaaactggtagatgatgatgatttgttg |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49739198 |
ctttgatccttcaccttgttcttcttggaatcttggcgcatgtcagccatttcttggccattttcatgacctgaaactggtagatgatgatgatttgttg |
49739297 |
T |
|
| Q |
410 |
accctgtcatctcagttgcagtaatatctccgtccaagctagccttggccaacattgtccacatgaaaaacctctgttgcttacaccttataaaaaccac |
509 |
Q |
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| T |
49739298 |
accctgtcatctcagttgcagtaatatctccgtccaagctagccttggccaacattgtccacgtgaaaaacctctgttgcttacaccttataaaaaccac |
49739397 |
T |
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| Q |
510 |
aatgaaacagttgaataaagttcaccagtttgagttagcaaatctcattaagctctatgtaacaacttaattaagcgcttatgacataagcgcttt |
605 |
Q |
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| T |
49739398 |
aatgaaacagttgaataaagttcaccagtttgagttagcaaatctcattaagctctatgtaacaacttaattaagcgcttatgacataagcgcttt |
49739493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 213 - 293
Target Start/End: Complemental strand, 36284202 - 36284122
Alignment:
| Q |
213 |
tccattcccaacagcaccgatagtcccaacaaacatcaataaataatcccaagagtctgcaaatgagaaaagcttgtaaaa |
293 |
Q |
| |
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|||||| |||| |||||| ||||| || ||||||||||||| || ||| |||||||||||| ||||| || |||||||| |
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| T |
36284202 |
tccatttccaatagcaccaatagttcccacaaacatcaatacatgatcaagagagtctgcaaaagagaagagtttgtaaaa |
36284122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 110 - 465
Target Start/End: Complemental strand, 51210987 - 51210632
Alignment:
| Q |
110 |
ttgttaccttggaaactagatgaactacttggttggtgttaacatttcctccaaaagcatcaatagcatctccaataattatagtcagtaaaggcataga |
209 |
Q |
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||||||||||||||||| ||||||||||||| || ||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
51210987 |
ttgttaccttggaaacttgatgaactacttgtttagtgctaacatttcctccaaaagcattaatagcatctccaataattatagtcattaaaggcataga |
51210888 |
T |
|
| Q |
210 |
gactccattcccaacagcaccgatagtcccaacaaacatcaataaataatcccaagagtctgcaaatgagaaaagcttgtaaaagggtactgttttcttg |
309 |
Q |
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|| |||||||||||| ||| |||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| || ||| |
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| T |
51210887 |
gattccattcccaacgccacttatagtcccaacaaacatcaacaaataatcccatgagtctgcaaatgtgaaaagcttgtaaaagggtactgtcttattg |
51210788 |
T |
|
| Q |
310 |
ctttgatccttcaccttgttcttcttggaatcttggcgcatgtcagccatttcttggccattttcatgacct---gaaactggtagatgatgatgatttg |
406 |
Q |
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|||||||||||||||||||| ||||||||||| || ||||||||||||||||||| |||||||| |||| | ||||||| |||||||| ||| |
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| T |
51210787 |
ctttgatccttcaccttgttattcttggaatcatgttgcatgtcagccatttcttgaacattttcagcacctgcaggaactggt---ggatgatgacttg |
51210691 |
T |
|
| Q |
407 |
ttgaccctgtcatctcagttgcagtaatatctccgtccaagctagccttggccaacatt |
465 |
Q |
| |
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||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||| |
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| T |
51210690 |
ttgaccctgtcatctcagttgaagcaatatctccatccaagctagccttggccaacatt |
51210632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 202 - 302
Target Start/End: Complemental strand, 51197321 - 51197221
Alignment:
| Q |
202 |
ggcatagagactccattcccaacagcaccgatagtcccaacaaacatcaataaataatcccaagagtctgcaaatgagaaaagcttgtaaaagggtactg |
301 |
Q |
| |
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||||| |||| ||||||||||| |||||| | ||||||||||||||||||||||| |||| |||| || |||||||||||||||||||| |||||||||| |
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| T |
51197321 |
ggcattgagattccattcccaatagcaccaacagtcccaacaaacatcaataaatgatccaaagaatcagcaaatgagaaaagcttgtataagggtactg |
51197222 |
T |
|
| Q |
302 |
t |
302 |
Q |
| |
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| |
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|
| T |
51197221 |
t |
51197221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 205 - 305
Target Start/End: Complemental strand, 51143918 - 51143818
Alignment:
| Q |
205 |
atagagactccattcccaacagcaccgatagtcccaacaaacatcaataaataatcccaagagtctgcaaatgagaaaagcttgtaaaagggtactgttt |
304 |
Q |
| |
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||||||| ||||||||||| |||||| | |||||| | || |||||||||| |||| ||| || |||||||||||||||||||| ||||||||||||| |
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| T |
51143918 |
atagagagtccattcccaatagcacccaaagtccccataagcatcaataaacgatccgaaggatcagcaaatgagaaaagcttgtataagggtactgttt |
51143819 |
T |
|
| Q |
305 |
t |
305 |
Q |
| |
|
| |
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|
| T |
51143818 |
t |
51143818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 205 - 302
Target Start/End: Complemental strand, 51155062 - 51154965
Alignment:
| Q |
205 |
atagagactccattcccaacagcaccgatagtcccaacaaacatcaataaataatcccaagagtctgcaaatgagaaaagcttgtaaaagggtactgt |
302 |
Q |
| |
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||||||| ||||||||||| |||||| | |||||| | || |||||||||| |||| ||| || |||||||||||||||||||| ||||||||||| |
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| T |
51155062 |
atagagagtccattcccaatagcacctacagtccccataagcatcaataaacgatccgaaggatcagcaaatgagaaaagcttgtataagggtactgt |
51154965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 302
Target Start/End: Original strand, 29939142 - 29939237
Alignment:
| Q |
207 |
agagactccattcccaacagcaccgatagtcccaacaaacatcaataaataatcccaagagtctgcaaatgagaaaagcttgtaaaagggtactgt |
302 |
Q |
| |
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||||| ||||||||||| |||||| | |||||| | || |||||||||| ||||| ||| || |||||||||||||||||||| |||| |||||| |
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| T |
29939142 |
agagattccattcccaatagcacctacagtccccataagcatcaataaacaatccaaaggatcagcaaatgagaaaagcttgtataaggatactgt |
29939237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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