View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6267_low_3 (Length: 249)

Name: NF6267_low_3
Description: NF6267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6267_low_3
NF6267_low_3
[»] chr2 (8 HSPs)
chr2 (6-231)||(16661582-16661807)
chr2 (112-231)||(7542685-7542804)
chr2 (70-231)||(12235106-12235267)
chr2 (16-231)||(12258171-12258386)
chr2 (82-227)||(16657111-16657256)
chr2 (16-182)||(12245045-12245211)
chr2 (110-231)||(11999851-11999972)
chr2 (111-205)||(14703866-14703960)
[»] chr7 (20 HSPs)
chr7 (16-231)||(8585296-8585511)
chr7 (15-231)||(8628894-8629110)
chr7 (16-231)||(8667782-8667997)
chr7 (16-231)||(10493964-10494179)
chr7 (16-231)||(8671220-8671435)
chr7 (16-231)||(13333046-13333261)
chr7 (82-231)||(8659792-8659941)
chr7 (76-231)||(1301887-1302042)
chr7 (84-231)||(8654881-8655028)
chr7 (82-231)||(3147701-3147850)
chr7 (82-206)||(8640164-8640285)
chr7 (29-231)||(17268315-17268517)
chr7 (110-231)||(6789969-6790090)
chr7 (19-231)||(8545998-8546210)
chr7 (82-229)||(17260670-17260817)
chr7 (19-206)||(27830490-27830677)
chr7 (74-135)||(8382562-8382623)
chr7 (70-135)||(8591055-8591120)
chr7 (16-194)||(7877360-7877538)
chr7 (51-186)||(8647275-8647407)
[»] chr4 (3 HSPs)
chr4 (18-231)||(30775617-30775830)
chr4 (16-228)||(9335484-9335696)
chr4 (122-231)||(35132915-35133024)
[»] chr1 (3 HSPs)
chr1 (18-231)||(34466383-34466596)
chr1 (82-205)||(15595468-15595588)
chr1 (110-231)||(4678148-4678269)
[»] chr5 (1 HSPs)
chr5 (38-231)||(28220336-28220529)
[»] chr8 (1 HSPs)
chr8 (82-231)||(43745276-43745425)
[»] chr6 (1 HSPs)
chr6 (84-231)||(28911013-28911160)


Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 6 - 231
Target Start/End: Complemental strand, 16661807 - 16661582
Alignment:
Q  6 aggagcagagacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaa 105  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16661807 aggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaa 16661708  T
Q  106 aggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16661707 aggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaa 16661608  T
Q  206 cggggtcactaaatttcctaccaatt 231  Q
    ||||||||||||||||||||||||||    
T  16661607 cggggtcactaaatttcctaccaatt 16661582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 231
Target Start/End: Original strand, 7542685 - 7542804
Alignment:
Q  112 ttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggt 211  Q
    ||||||||| |||||||||||||  ||||| | ||| |||||||  |||| ||| | |||||||| ||||| ||||||||||| | ||||||||| || |    
T  7542685 ttctcctgatccttgtacttaacggtaatcatgggtctgtcattgtcacccgcagtcaccttgaatggccataacagtatatcatcttgaacaacaggat 7542784  T
Q  212 cactaaatttcctaccaatt 231  Q
    ||||||| ||||||||||||    
T  7542785 cactaaacttcctaccaatt 7542804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 231
Target Start/End: Original strand, 12235106 - 12235267
Alignment:
Q  70 tttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataa 169  Q
    |||||||| || |||||||| | ||| |||| ||| ||  |||||||  ||||||||||||| ||| ||||| | ||||||||||| |||||||||   |    
T  12235106 tttgtgagtaccatagatgatacttcttcgggacatagctgcttctctcgacccttgtacttgacaataatcatgggtttgtcattgacaccagcagcga 12235205  T
Q  170 ccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaatt 231  Q
    ||||||| ||||||||||  | ||| | |||||||||  | |||||||| ||||||||||||    
T  12235206 ccttgaatggccacaacatcacatcatcttgaacaacttgatcactaaacttcctaccaatt 12235267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 12258386 - 12258171
Alignment:
Q  16 acaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttct 115  Q
    ||||||||||| ||||| |||||||| ||||| ||||| ||||  ||   ||| ||||| |  || | |||||| | |||||||||||||||  ||||||    
T  12258386 acaactgcattcttaacgggtgattctaaatatgcctcagcaatttctcgcatctttgtcaataccacagatgatacttcctcggcacaaagctgcttct 12258287  T
Q  116 cctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcact 215  Q
    | |||  ||||||||| ||  ||||| | |||||| |||| ||||||||| | || || || |||||||||| |||||| | |||||| ||  | |||||    
T  12258286 cttgattcttgtactttaccgtaatcatgggtttgccattgacaccagcagtgactttaaatggccacaacattatatcatcttgaactacttgatcact 12258187  T
Q  216 aaatttcctaccaatt 231  Q
    ||| ||||||||||||    
T  12258186 aaacttcctaccaatt 12258171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 227
Target Start/End: Complemental strand, 16657256 - 16657111
Alignment:
Q  82 atagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggcc 181  Q
    |||||||| |||||||| |||||||   |  |||| |||||||| |||| || | ||||| | ||||||||||| || || ||||| |||||||| ||||    
T  16657256 atagatgatatttcctcagcacaaaattggctctcttgacccttatactgaagagtaatcattggtttgtcattcactccggcaatgaccttgaatggcc 16657157  T
Q  182 acaacagtatatctttttgaacaacggggtcactaaatttcctacc 227  Q
    |||| |  ||||| ||||||||||| || |||||||| ||||||||    
T  16657156 acaagatgatatcattttgaacaacaggatcactaaacttcctacc 16657111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 12245211 - 12245045
Alignment:
Q  16 acaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttct 115  Q
    ||||| ||||| || ||||||||||| ||||| ||||| ||||  ||   ||| ||||| || || |||||||| | ||| || ||||| ||  ||||||    
T  12245211 acaacagcattctttaccggtgattctaaatatgcctcagcaatttctcgcatctttgttagtaccatagatgatacttcttcagcacatagctgcttct 12245112  T
Q  116 cctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggcca 182  Q
    |||| || ||||| |||||| ||||  | ||||||||||| ||||||||| | ||||||||||||||    
T  12245111 cctggcctttgtagttaacagtaattattggtttgtcattgacaccagcagtgaccttgaacggcca 12245045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 231
Target Start/End: Original strand, 11999851 - 11999972
Alignment:
Q  110 gcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggg 209  Q
    |||||||||| || |||||||||||| ||||  | ||||||||||| ||| ||||| | |||||||| ||||| |||| |  ||| | |||||||||  |    
T  11999851 gcttctcctggcctttgtacttaacagtaattattggtttgtcattgacatcagcagtgaccttgaatggccataacaatccatcatcttgaacaacaag 11999950  T
Q  210 gtcactaaatttcctaccaatt 231  Q
     |||||||| |||| |||||||    
T  11999951 atcactaaacttccaaccaatt 11999972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 14703866 - 14703960
Alignment:
Q  111 cttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaa 205  Q
    |||||||||| |||||||||||||  ||||| | ||||||||||  || |||||| | ||||| || ||||| || |||||||| | ||||||||    
T  14703866 cttctcctgatccttgtacttaaccgtaatcatgggtttgtcatcgactccagcagtgaccttaaatggccataaaagtatatcatcttgaacaa 14703960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 8585511 - 8585296
Alignment:
Q  16 acaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttct 115  Q
    ||||||||||||| ||| ||||||| |||||| | |||||||| || |||||||||||||||||  |||||||| |||||||| ||||| |||  ||| |    
T  8585511 acaactgcattttgaacaggtgatttcaaatatgtctctgcaatcttcttcatgtttgtgaggatgatagatgatatttcctcagcacataggttctttt 8585412  T
Q  116 cctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcact 215  Q
    | |||||||||||||||||| ||||| |||||||||||||||||||||  ||||||||||| |||||||||| |||||| |||||||||||||| |||||    
T  8585411 cttgacccttgtacttaacagtaatcataggtttgtcattaacaccagagataaccttgaatggccacaacattatatcattttgaacaacgggatcact 8585312  T
Q  216 aaatttcctaccaatt 231  Q
    ||| ||||||||||||    
T  8585311 aaacttcctaccaatt 8585296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 8628894 - 8629110
Alignment:
Q  15 gacaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttc 114  Q
    ||||||||||||||| || ||||||| ||||||||||||||||| || |||||| ||||  |||| ||||||||| |||||||| ||||| |||  ||||    
T  8628894 gacaactgcattttttacaggtgatttcaaataagcctctgcaatcttcttcatatttgcaaggataatagatgatatttcctcagcacataggttcttc 8628993  T
Q  115 tcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcac 214  Q
    || ||||||||||||||||||  |||| |||| |||||||||| ||||| |||||||||||| ||||| ||||  ||||| ||||||||||| || ||||    
T  8628994 tcttgacccttgtacttaacagcaatcataggcttgtcattaagaccagaaataaccttgaatggccagaacatgatatccttttgaacaacaggatcac 8629093  T
Q  215 taaatttcctaccaatt 231  Q
    |||| ||||||||||||    
T  8629094 taaacttcctaccaatt 8629110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 8667782 - 8667997
Alignment:
Q  16 acaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttct 115  Q
    ||||| ||||| || ||||| ||  ||| ||| ||||| ||||||||   ||| ||||| || || ||||| || |||||||| ||||||| | ||||||    
T  8667782 acaacggcattcttgaccggcgaccccagatatgcctccgcaacctctcgcatctttgtaagcaccatagaagatatttcctcagcacaaaagtgcttct 8667881  T
Q  116 cctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcact 215  Q
    | |||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||| |||||||||| ||||||| |||||||||||||||||||    
T  8667882 cttgacccttgtacttaacagtaatcataggtttgtcattaacaccagaaataaccttgaatggccacaacaatatatctctttgaacaacggggtcact 8667981  T
Q  216 aaatttcctaccaatt 231  Q
    ||| ||||||||||||    
T  8667982 aaacttcctaccaatt 8667997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 10494179 - 10493964
Alignment:
Q  16 acaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttct 115  Q
    ||||| ||||| || || |||||  ||||||| ||||||||||||||   ||| ||| | ||||| |||||||| |||||||||||||||| | ||||||    
T  10494179 acaacagcattcttgactggtgaccccaaatatgcctctgcaacctctcgcatctttataaggaccatagatgatatttcctcggcacaaaagtgcttct 10494080  T
Q  116 cctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcact 215  Q
    | ||||||||||||||| |  ||||| ||||||||||||| ||||| | | |||||||||| |||||||||| |||||| ||||||||||| || |||||    
T  10494079 cttgacccttgtacttagcggtaatcataggtttgtcattgacacctgaagtaaccttgaatggccacaacattatatcgttttgaacaaccggatcact 10493980  T
Q  216 aaatttcctaccaatt 231  Q
    ||| ||||| ||||||    
T  10493979 aaacttcctgccaatt 10493964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 8671435 - 8671220
Alignment:
Q  16 acaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttct 115  Q
    ||||| ||||| || |||||||| |||| ||| ||||| ||||||||   ||| ||||| || || ||||| || |||||||| |||||||   ||||||    
T  8671435 acaacggcattcttgaccggtgactccagatatgcctccgcaacctctcgcatctttgtaagcaccatagaagatatttcctcagcacaaaattgcttct 8671336  T
Q  116 cctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcact 215  Q
    |  |||| | |||||| ||| ||||| ||||||||||||||||||||| |||||||||||| |||||||||| ||||||| |||||||||| || |||||    
T  8671335 ctagaccttcgtacttgacagtaatcataggtttgtcattaacaccagaaataaccttgaatggccacaacaatatatctctttgaacaaccggatcact 8671236  T
Q  216 aaatttcctaccaatt 231  Q
    ||| ||||||||||||    
T  8671235 aaacttcctaccaatt 8671220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 13333261 - 13333046
Alignment:
Q  16 acaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttct 115  Q
    ||||| ||||| || || |||||  ||| ||| ||||||||||||||   ||| ||||| ||||| |||||||| |||||||||||||||| | ||||||    
T  13333261 acaacggcattcttgactggtgaccccatatatgcctctgcaacctctcgcatctttgtaaggaccatagatgatatttcctcggcacaaaagtgcttct 13333162  T
Q  116 cctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcact 215  Q
    | ||||||||| ||||| |  ||||| |||| ||||| || ||||||| | |||||||||| |||||||||| |||||| ||||||||||| || |||||    
T  13333161 cttgacccttgcacttagcggtaatcataggcttgtcgttgacaccagaagtaaccttgaatggccacaacattatatcattttgaacaaccggatcact 13333062  T
Q  216 aaatttcctaccaatt 231  Q
    ||| ||||||||||||    
T  13333061 aaacttcctaccaatt 13333046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 82 - 231
Target Start/End: Original strand, 8659792 - 8659941
Alignment:
Q  82 atagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggcc 181  Q
    |||||||| |||||||| ||||||| | ||||||||||||||||||||| |||| ||||| |  ||||||| || |||||||| ||||||||||| ||||    
T  8659792 atagatgatatttcctccgcacaaaagtgcttctcctgacccttgtactgaacattaatcatgagtttgtcgttcacaccagcgataaccttgaatggcc 8659891  T
Q  182 acaacagtatatctttttgaacaacggggtcactaaatttcctaccaatt 231  Q
    ||||||  || |||||||||||||| |  |||||||| ||||||||||||    
T  8659892 acaacatcatgtctttttgaacaactgaatcactaaacttcctaccaatt 8659941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 231
Target Start/End: Original strand, 1301887 - 1302042
Alignment:
Q  76 aggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttga 175  Q
    ||||| |||||||| ||||||||  | |||| | ||||||||||||||||||||||||||  ||||   ||||||||||| ||||| || || |||||||    
T  1301887 aggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtacttaacaacaatcacgggtttgtcattcacaccggcgatgaccttga 1301986  T
Q  176 acggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaatt 231  Q
    | ||||||||||  || |||||||||||||| |  |||||||| ||||||||||||    
T  1301987 atggccacaacatcatgtctttttgaacaactgaatcactaaacttcctaccaatt 1302042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 84 - 231
Target Start/End: Original strand, 8654881 - 8655028
Alignment:
Q  84 agatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccac 183  Q
    |||||| |||||||| |||||||   ||||||| ||||| |||||||||||| ||||| | ||||||||||||||||||| | ||||| |||| ||||||    
T  8654881 agatgatatttcctcagcacaaaattgcttctcttgacctttgtacttaacagtaatcatgggtttgtcattaacaccagaagtaaccatgaatggccac 8654980  T
Q  184 aacagtatatctttttgaacaacggggtcactaaatttcctaccaatt 231  Q
    ||||  ||||| ||||||||||  || |||||| | ||||||||||||    
T  8654981 aacatgatatccttttgaacaataggatcactatacttcctaccaatt 8655028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 231
Target Start/End: Original strand, 3147701 - 3147850
Alignment:
Q  82 atagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggcc 181  Q
    |||||||||||||| || ||||| ||| |||||||||| |||||| |||||||   |||| | ||||||||||| || ||   ||| |||||||| ||||    
T  3147701 atagatgagatttcttcagcacataggtgcttctcctgtcccttgcacttaaccgaaatcatgggtttgtcattcactccgcaaatgaccttgaatggcc 3147800  T
Q  182 acaacagtatatctttttgaacaacggggtcactaaatttcctaccaatt 231  Q
    ||||||  ||||| ||||||||||| |  |||| ||| ||||||||||||    
T  3147801 acaacatcatatcattttgaacaacagaatcaccaaacttcctaccaatt 3147850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 206
Target Start/End: Complemental strand, 8640285 - 8640164
Alignment:
Q  82 atagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggcc 181  Q
    |||||||| ||||||||||||||||   ||||||| | ||||||||| |||||| ||||||| ||||||||||| || |   |||| |||||||| ||||    
T  8640285 atagatgatatttcctcggcacaaaaacgcttctcttcacccttgtatttaacaataatcgtgggtttgtcattcaccc---caatgaccttgaatggcc 8640189  T
Q  182 acaacagtatatctttttgaacaac 206  Q
    |||||   ||||| |||||||||||    
T  8640188 acaacttcatatcattttgaacaac 8640164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 231
Target Start/End: Original strand, 17268315 - 17268517
Alignment:
Q  29 taaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgta 128  Q
    |||||| |||||| | |||  |||| |||| ||||  ||| |||||||| || ||||| || |||||||| ||||||| | | |||||| | ||||||||    
T  17268315 taaccgatgattctagatattcctcagcaatctcccgcatctttgtgagtaccatagacgaaatttcctctgcacaaaagtgtttctcccgtcccttgta 17268414  T
Q  129 cttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctacca 228  Q
    ||| |    |||| | ||||||||||| | | | ||||| |||||||| |||||| ||| |||||||||||| || || || |||||||| |||||||||    
T  17268415 cttgagggaaatcattggtttgtcattcatatccgcaatgaccttgaatggccacgacattatatctttttggaccacaggatcactaaacttcctacca 17268514  T
Q  229 att 231  Q
    |||    
T  17268515 att 17268517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 231
Target Start/End: Original strand, 6789969 - 6790090
Alignment:
Q  110 gcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggg 209  Q
    ||||||||| |||||| |||| ||||  |||| | || |||||||| || |||||||| |||||||| ||||| ||||  ||||| ||||||||||| |     
T  6789969 gcttctcctcacccttatactcaacaacaatcatgggcttgtcattgacgccagcaatgaccttgaatggccaaaacatcatatcattttgaacaacaga 6790068  T
Q  210 gtcactaaatttcctaccaatt 231  Q
     |||||||| ||||||||||||    
T  6790069 atcactaaacttcctaccaatt 6790090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 8545998 - 8546210
Alignment:
Q  19 actgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcct 118  Q
    |||||||| ||||| ||||| |||||| | |||||||||| |||   ||| | || |||||  | |||||| ||||| || |||  || | |||| ||||    
T  8545998 actgcattcttaacaggtgactccaaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatgatatttcttcagcaacaaagtgcttttcct 8546097  T
Q  119 gacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaa 218  Q
     ||||||||| || |||  ||| || ||||||||||||||||| | ||| ||||| || ||||||||||||| ||| || ||||||| ||  |||||| |    
T  8546098 cacccttgtagttcacaagaattgtcggtttgtcattaacaccggaaatgaccttaaagggccacaacagtagatcattctgaacaaaggaatcactata 8546197  T
Q  219 tttcctaccaatt 231  Q
    |||||| ||||||    
T  8546198 tttccttccaatt 8546210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 229
Target Start/End: Original strand, 17260670 - 17260817
Alignment:
Q  82 atagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggcc 181  Q
    ||||| ||||||||||| ||||||| | | |||||| | ||||||||||| |    |||| | ||||||||||| | | | ||||| |||||||| ||||    
T  17260670 atagacgagatttcctctgcacaaaagtgtttctcccgtcccttgtacttgagggaaatcattggtttgtcattcatatccgcaatgaccttgaatggcc 17260769  T
Q  182 acaacagtatatctttttgaacaacggggtcactaaatttcctaccaa 229  Q
    || ||| |||||||||||| || || || |||||||| ||||||||||    
T  17260770 acgacattatatctttttggaccacaggatcactaaacttcctaccaa 17260817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 27830677 - 27830490
Alignment:
Q  19 actgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcct 118  Q
    |||||||| ||||||||||||| |||||| ||||| || | |||   ||| ||||| ||||| || ||||| |||||||| ||||| | | | |||||||    
T  27830677 actgcattcttaaccggtgattgcaaatatgcctccgcgatctctcgcatctttgtaaggaccattgatgaaatttcctccgcacataagtgtttctcct 27830578  T
Q  119 gacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaac 206  Q
    ||| |||||||||||||  || | | |||||||  || ||| ||| ||| || |||||  |||||||   ||||||||||||||||||    
T  27830577 gactcttgtacttaacaacaaacatgggtttgttgtttacatcagtaatgactttgaatagccacaagtttatatctttttgaacaac 27830490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 8382623 - 8382562
Alignment:
Q  74 tgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaaca 135  Q
    ||||||| ||||| ||||||||||||||||||||| | || |||| |||||| |||||||||    
T  8382623 tgaggaccatagaggagatttcctcggcacaaaggtgtttttcctcacccttatacttaaca 8382562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 8591055 - 8591120
Alignment:
Q  70 tttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaaca 135  Q
    |||||||| || || |||||||||||||| ||||||||  |||| |||| ||||||||||||||||    
T  8591055 tttgtgagaaccatggatgagatttcctccgcacaaagacgcttttcctcacccttgtacttaaca 8591120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 7877538 - 7877360
Alignment:
Q  16 acaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttct 115  Q
    ||||||||||| || || ||||| |||||| |   |||||||| |||   ||| ||||| ||||  || ||||| |||||||||||||||| | |||| |    
T  7877538 acaactgcattcttgacaggtgactccaaaaacttctctgcaatctcgcgcatctttgtaaggatcatggatgatatttcctcggcacaaaagtgctttt 7877439  T
Q  116 cctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatc 194  Q
    |||  ||||| ||||||||| | ||   ||| ||||||| |  |||||||| |||||| || ||||||||||| |||||    
T  7877438 cctcgcccttatacttaacaatgatatcaggcttgtcatcagaaccagcaacaaccttaaatggccacaacagaatatc 7877360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 186
Target Start/End: Original strand, 8647275 - 8647407
Alignment:
Q  51 ctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttg 150  Q
    ||||||||||||   ||| ||||||||||  || ||||| |||||||| ||||||    ||||||| | ||||||||| |||||| ||||| | ||||||    
T  8647275 ctctgcaacctctcgcatctttgtgaggatcatcgatgatatttcctcagcacaataacgcttctcttcacccttgtatttaacaataatcatgggtttg 8647374  T
Q  151 tcattaacaccagcaataaccttgaacggccacaac 186  Q
    ||||| || |   |||| |||||||| |||||||||    
T  8647375 tcattcaccc---caatgaccttgaatggccacaac 8647407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 30775617 - 30775830
Alignment:
Q  18 aactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcc 117  Q
    ||||||||||||||| || |||||||||||   |||||||| |||  |||| ||||||||||| || ||||| |||||||||||||| ||||| ||||||    
T  30775617 aactgcatttttaactggggattccaaatacatctctgcaatctctctcatatttgtgaggactattgatgaaatttcctcggcacagaggagtttctcc 30775716  T
Q  118 tgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaa 217  Q
    || |||||| ||||||    |||| | ||||||||||||||||||| || ||||||||| ||||||||||  ||||||||||||||||| ||||| ||||    
T  30775717 tggcccttgaacttaagggaaatcatgggtttgtcattaacaccagaaacaaccttgaatggccacaacaaaatatctttttgaacaacagggtcgctaa 30775816  T
Q  218 atttcctaccaatt 231  Q
    ||||||||||||||    
T  30775817 atttcctaccaatt 30775830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 9335696 - 9335484
Alignment:
Q  16 acaactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttct 115  Q
    ||||| ||||| || ||||| ||  ||||||| ||||| ||||||||  |||| ||||| || |  ||||| || |||||||| ||||||| | ||||||    
T  9335696 acaacggcattcttgaccggcgaccccaaatatgcctccgcaacctctctcatctttgtaagcaacatagaagatatttcctcagcacaaaagtgcttct 9335597  T
Q  116 cctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcact 215  Q
    | ||||||||||| |||||| ||||| ||||||||||||||||||||| |||||||||||| |||||||||| ||||||| ||||||||||  | |||||    
T  9335596 cttgacccttgtagttaacagtaatcataggtttgtcattaacaccagaaataaccttgaatggccacaacaatatatctctttgaacaaccagatcact 9335497  T
Q  216 aaatttcctacca 228  Q
    ||| |||||||||    
T  9335496 aaacttcctacca 9335484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 231
Target Start/End: Original strand, 35132915 - 35133024
Alignment:
Q  122 ccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaattt 221  Q
    |||||||||||||  ||||| | ||||||||||| ||||| ||| | |||||||| ||||| | ||||||||| | ||||||||  || |||||||| ||    
T  35132915 ccttgtacttaaccgtaatcatgggtttgtcatttacaccggcagtgaccttgaatggccatagcagtatatcatcttgaacaataggatcactaaactt 35133014  T
Q  222 cctaccaatt 231  Q
    ||||||||||    
T  35133015 cctaccaatt 35133024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 34466596 - 34466383
Alignment:
Q  18 aactgcatttttaaccggtgattccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcc 117  Q
    ||||||||| ||||  ||||||||||||||  ||||||||   |||  ||| ||||  ||||  ||||||||||||||||| ||||| ||| ||||||||    
T  34466596 aactgcattcttaattggtgattccaaatattcctctgcagtatcccgcatctttgaaaggatcatagatgagatttcctcagcacataggtgcttctcc 34466497  T
Q  118 tgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaa 217  Q
    |||||||| |||||||    |||| | || ||||||||||||||||||||||| ||||| ||||| ||||  |||||| |||||||| | || |||||||    
T  34466496 tgacccttatacttaagggaaatcattggcttgtcattaacaccagcaataactttgaatggccataacatcatatctgtttgaacatcaggatcactaa 34466397  T
Q  218 atttcctaccaatt 231  Q
    |||| || ||||||    
T  34466396 attttctgccaatt 34466383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 205
Target Start/End: Original strand, 15595468 - 15595588
Alignment:
Q  82 atagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggcc 181  Q
    ||||| || |||||||| ||||||| | |||| || ||||||||||| |||||| ||||| | ||||||||||| ||||   |||| |||||||| ||||    
T  15595468 atagacgatatttcctcagcacaaaagcgcttttcttgacccttgtatttaacaataatcatgggtttgtcattcacac---caatgaccttgaatggcc 15595564  T
Q  182 acaacagtatatctttttgaacaa 205  Q
    |||||  |||||| ||||||||||    
T  15595565 acaactttatatcattttgaacaa 15595588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 4678269 - 4678148
Alignment:
Q  110 gcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggg 209  Q
    ||||||| |||||||||||||||||||||||| | ||||| |||||  ||||||  || ||| | || ||||||||||  || |||||||||||||| |     
T  4678269 gcttctcttgacccttgtacttaacactaatcatcggtttatcattctcaccagtgatgaccctaaatggccacaacatgatgtctttttgaacaacaga 4678170  T
Q  210 gtcactaaatttcctaccaatt 231  Q
     |||||| |  |||||||||||    
T  4678169 atcactatacctcctaccaatt 4678148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 231
Target Start/End: Original strand, 28220336 - 28220529
Alignment:
Q  38 attccaaataagcctctgcaacctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacact 137  Q
    |||||||| | |||||||||| |||   ||| ||||| || || |||||||||||||| |||||||| ||| |||||||||| |||||||||||||||      
T  28220336 attccaaaaaggcctctgcaatctcacgcatctttgttagaaccatagatgagatttcttcggcacataggtgcttctcctgtcccttgtacttaacaga 28220435  T
Q  138 aatcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaatt 231  Q
    |||| | |||||||| ||    || | ||| |||||||| |||||||||  |||||| | ||||||||| | ||||||||| ||||||||||||    
T  28220436 aatcatgggtttgtcgttcgttccggaaatgaccttgaatggccacaactttatatcatcttgaacaacagagtcactaaacttcctaccaatt 28220529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 231
Target Start/End: Original strand, 43745276 - 43745425
Alignment:
Q  82 atagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggcc 181  Q
    |||||||||||||| |||||||| ||| |||||||||| |||||||||||||||  ||||   ||||||||||| |  || | ||| |||||||||||||    
T  43745276 atagatgagatttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaatcacgggtttgtcattcaatccggaaatgaccttgaacggcc 43745375  T
Q  182 acaacagtatatctttttgaacaacggggtcactaaatttcctaccaatt 231  Q
    |||||   ||||| ||||||||| | |  ||| |||| ||||||||||||    
T  43745376 acaacttcatatcattttgaacatcagaatcattaaacttcctaccaatt 43745425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 231
Target Start/End: Original strand, 28911013 - 28911160
Alignment:
Q  84 agatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaacactaatcgtaggtttgtcattaacaccagcaataaccttgaacggccac 183  Q
    ||||||||||||||| ||||| |    |||||||||| |||||||||| |||   ||| | || |||||||| ||||| ||||| |||||||||||| ||    
T  28911013 agatgagatttcctcagcacataatttcttctcctgatccttgtacttgacagatatcatggggttgtcattgacaccggcaatgaccttgaacggcgac 28911112  T
Q  184 aacagtatatctttttgaacaacggggtcactaaatttcctaccaatt 231  Q
    |||| |  ||| |||||||||||||| |||||||| |||||| |||||    
T  28911113 aacattgaatcgttttgaacaacgggatcactaaacttcctatcaatt 28911160  T

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