View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6268_high_11 (Length: 400)
Name: NF6268_high_11
Description: NF6268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6268_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 171 - 392
Target Start/End: Complemental strand, 48178661 - 48178441
Alignment:
| Q |
171 |
gagtgtaccttagtttagacaactaattgttgttgctgttgtcgttggtatttgaatgtaatgtttgacagtaacgttttctggtattgttgttgtttct |
270 |
Q |
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| T |
48178661 |
gagtgtaccttagtttagacaactaattgttgttgctgttgtcgttggtatttgaatgtaatgtttgacagtaacgttttctggtactgttg-------t |
48178569 |
T |
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| Q |
271 |
tgttctttcttcaacttccgcttctg------caattccaattccacgagagatgtaaaccaacttttannnnnnnatttagatgaaagacttaatttct |
364 |
Q |
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| T |
48178568 |
tgttgtttcttcaacttccgcttctgcaattccaattccaattccacgagagatgtaaaccaacttttattttattttttagatgaaagacttaatttct |
48178469 |
T |
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| Q |
365 |
gacaaaaataaaatcaaaatttgtctgt |
392 |
Q |
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| T |
48178468 |
gacaaaaataaaatcaaaatttgtctgt |
48178441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 48178809 - 48178679
Alignment:
| Q |
17 |
cagttcggatccaatagaattattcccaatctggagatttcaatttctgaatccaaaatttaattaatatttgtaaactgcgaggtcggaattttcccat |
116 |
Q |
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| T |
48178809 |
cagttcggatccaatagaattattcccaatctggagatttcaatttatgaatccaaaatttaattaatatttgtaaactgcgaggtcggaattttcccat |
48178710 |
T |
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| Q |
117 |
gattaagatgcggaagaagagagtttcatgg |
147 |
Q |
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| T |
48178709 |
gattaagatgcggaagaagagagtttcatgg |
48178679 |
T |
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