View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6268_high_14 (Length: 339)
Name: NF6268_high_14
Description: NF6268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6268_high_14 |
 | |
|
| [»] scaffold0710 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0710 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 5128 - 4812
Alignment:
| Q |
1 |
gaaccttacataagtagcagaagctcctacaaaaccaaaagtgaaacaatggttaagcaaaacactagggaagctccagccacaagacagaaaactcaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5128 |
gaaccttacataagtagcagaagctcctacaaaaccaaaggtgaaacaatggttaagcaaaacactagggaagctccagccacaagacagaaaactcaaa |
5029 |
T |
|
| Q |
101 |
acttgttcggaaaatgtcaacaaacagatactcctcttttatgatttaataaataaatgcttacctaaaacaaaaactgcagcaccaatgaatactgctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5028 |
acttgttcggaaaatgtcaacaaacagatactcctcttttatgatttaataaataaatgcttacctaaaacaaaaactgcagcaccaatgaatactgctc |
4929 |
T |
|
| Q |
201 |
gaaaaatacgaccaggtgcatctgcaagatactcaattaaaaatgccaacaatcccgctgacagcgtccctaatcctctattaagtcctttgcataaggt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4928 |
gaaaaatacgaccaggtgcatctgcaagatactcaattaaaaatgccaacaatcccgctgacagcgtccctaatcctctattaagtcctttgcataaggt |
4829 |
T |
|
| Q |
301 |
tcctcctgaaatcataa |
317 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
4828 |
tcctcctgcaatcataa |
4812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 51861169 - 51860853
Alignment:
| Q |
1 |
gaaccttacataagtagcagaagctcctacaaaaccaaaagtgaaacaatggttaagcaaaacactagggaagctccagccacaagacagaaaactcaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51861169 |
gaaccttacataagtagcagaagctcctacaaaaccaaaggtgaaacaatggttaagcaaaacactagggaagctccagccacaagacagaaaactcaaa |
51861070 |
T |
|
| Q |
101 |
acttgttcggaaaatgtcaacaaacagatactcctcttttatgatttaataaataaatgcttacctaaaacaaaaactgcagcaccaatgaatactgctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51861069 |
acttgttcggaaaatgtcaacaaacagatactcctcttttatgatttaataaataaatgcttacctaaaacaaaaactgcagcaccaatgaatactgctc |
51860970 |
T |
|
| Q |
201 |
gaaaaatacgaccaggtgcatctgcaagatactcaattaaaaatgccaacaatcccgctgacagcgtccctaatcctctattaagtcctttgcataaggt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51860969 |
gaaaaatacgaccaggtgcatctgcaagatactcaattaaaaatgccaacaatcccgctgacagcgtccctaatcctctattaagtcctttgcataaggt |
51860870 |
T |
|
| Q |
301 |
tcctcctgaaatcataa |
317 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
51860869 |
tcctcctgcaatcataa |
51860853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 160 - 317
Target Start/End: Complemental strand, 51821040 - 51820883
Alignment:
| Q |
160 |
cttacctaaaacaaaaactgcagcaccaatgaatactgctcgaaaaatacgaccaggtgcatctgcaagatactcaattaaaaatgccaacaatcccgct |
259 |
Q |
| |
|
||||||||||| |||||| |||||||||||||| | |||||||||||| || |||| |||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
51821040 |
cttacctaaaagaaaaaccgcagcaccaatgaaaattgctcgaaaaatctgatcagggttatctgcaagatactcaataaaaaatgccaacaatcctgct |
51820941 |
T |
|
| Q |
260 |
gacagcgtccctaatcctctattaagtcctttgcataaggttcctcctgaaatcataa |
317 |
Q |
| |
|
|| || || |||||||| || |||||||||| ||| || ||||||| |||||||| |
|
|
| T |
51820940 |
aacgaagttcccaatcctctgtttagtcctttgcttaaagtccctcctgcaatcataa |
51820883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 319
Target Start/End: Complemental strand, 51850577 - 51850415
Alignment:
| Q |
157 |
atgcttacctaaaacaaaaactgcagcaccaatgaatactgctcgaaaaatacgaccaggtgcatctgcaagatactcaattaaaaatgccaacaatccc |
256 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||| | ||| ||||||| | ||||| |||||||||||||| ||| || |||||||| |||| |
|
|
| T |
51850577 |
atgcttacctaaaataaaaactgcagcaccgatgaaaattgcatgaaaaatctggccaggaacatctgcaagataccgaataaagaatgccaatgatcct |
51850478 |
T |
|
| Q |
257 |
gctgacagcgtccctaatcctctattaagtcctttgcataaggttcctcctgaaatcataatc |
319 |
Q |
| |
|
||| ||| || || ||||||||||| |||||||||||||||||||| ||| |||||||||| |
|
|
| T |
51850477 |
gctaacaaagttcccaatcctctatttagtcctttgcataaggttccccctacaatcataatc |
51850415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 4782223 - 4782279
Alignment:
| Q |
241 |
aaatgccaacaatcccgctgacagcgtccctaatcctctattaagtcctttgcataa |
297 |
Q |
| |
|
||||||||| ||||| ||| |||| ||||| |||||||| ||||| ||||||||||| |
|
|
| T |
4782223 |
aaatgccaataatccagctaacagtgtccccaatcctctgttaagccctttgcataa |
4782279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University