View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6268_high_15 (Length: 338)
Name: NF6268_high_15
Description: NF6268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6268_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 12 - 314
Target Start/End: Complemental strand, 947606 - 947304
Alignment:
| Q |
12 |
tgagatgaacatactccgttattctaactttacatcaccagaccatcaatgcactgcacgtgagttaaaatacatcaatggtgaagagggcaaaagcgtc |
111 |
Q |
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| T |
947606 |
tgagatgaacatactacgttattctaactttacatcaccagaccatcaatgcactgcacgttagttaaaatacatcaatggtgaagagggcaaaagcgtc |
947507 |
T |
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| Q |
112 |
aagccgtcaagtgaaatatgttaggtaaaataagtggatggtggtcgtgggcagtctctattgactcacaactattgtcattattatgtaattaaatcta |
211 |
Q |
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| T |
947506 |
aagccgtcaagtgaaatatgttaggtaaaataagtggatggtggtcgtgggcagtctctattgactcacaactattgtcattattatgtaataaaatcta |
947407 |
T |
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| Q |
212 |
gtctagtgtttaaacttcaaaagtgaaactctataactgttttagtacttgtttttcatcatctttctgcagaacattttctattacaattgcaaattgg |
311 |
Q |
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| T |
947406 |
gtctagtgtttaaacttcaaaagtgaaactctacaactgttttagtacttgtttttcatcatctttctgcagaacattttctattacaattgcaaattgg |
947307 |
T |
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| Q |
312 |
atc |
314 |
Q |
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||| |
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| T |
947306 |
atc |
947304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 2001545 - 2001599
Alignment:
| Q |
91 |
ggtgaagagggcaaaagcgtcaagccgtcaagtgaaatatgttaggtaaaataagtg |
147 |
Q |
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| T |
2001545 |
ggtgaagagggcaaaag--tcaagccgtcaagtgaaatatgttgggtaaaataagtg |
2001599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 134
Target Start/End: Original strand, 1977627 - 1977670
Alignment:
| Q |
91 |
ggtgaagagggcaaaagcgtcaagccgtcaagtgaaatatgtta |
134 |
Q |
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| T |
1977627 |
ggtgaagaaggaaaaagcgtcaagccatcaagtgaaatatgtta |
1977670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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