View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6268_high_17 (Length: 293)
Name: NF6268_high_17
Description: NF6268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6268_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 283
Target Start/End: Original strand, 24203249 - 24203512
Alignment:
| Q |
12 |
ctcatgagatccatgtgagggatattatcaacttgaagaagttatttgagtatgcagtcatcaccttgcaagccagtttgtaaggtttgagttagaccca |
111 |
Q |
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| T |
24203249 |
ctcatgagatccatgtgagggatattatcaactcgaagaagttatttgagtacgcagtcatcaccttgcaagccagtttgtaagggctgagttagaccca |
24203348 |
T |
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| Q |
112 |
acctaaattctaggtgttacctactaaactggaatatcttttcttgacttacaccgctttgaatttaatgactttgtccttgaagtattcttcaagagtt |
211 |
Q |
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| T |
24203349 |
acctaaattctaagtattcc-------actggaatatcttttgttgacttaaaccagtttgaatttaatgactt-gtccttgaagtattctgcaagagtt |
24203440 |
T |
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| Q |
212 |
tataggttggttcttgtccttgaatttataccttacatactttttaagcattaaggtttattggttcctttg |
283 |
Q |
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| T |
24203441 |
tataggttggttcttgtccttgaatttataccatacatactttttaagcattaaggtttattggttcctttg |
24203512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 269
Target Start/End: Complemental strand, 29409987 - 29409796
Alignment:
| Q |
88 |
tttgtaaggtttgagttagacccaacctaaattctaggtgttacctactaaactggaatatcttttcttgacttacaccgctttgaatttaatgactt-- |
185 |
Q |
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| T |
29409987 |
tttgtaagggttgagttaggcccaccctaaattctaagagttaattgctaaactggaatatcttttattgacatacacctctttgaatttaatgacttca |
29409888 |
T |
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| Q |
186 |
-------tg-tccttgaagtattcttcaagagtttataggttggttcttgtccttgaatttataccttacatactttttaagcattaaggtt |
269 |
Q |
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| T |
29409887 |
caaatcgtgttggttggaatatactgcaagagtttataggcgggttcttgtccttgaactagtaccatacatactttttaagcattaaggtt |
29409796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 283
Target Start/End: Complemental strand, 27560418 - 27560361
Alignment:
| Q |
226 |
tgtccttgaatttataccttacatactttttaagcattaaggtttattggttcctttg |
283 |
Q |
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| T |
27560418 |
tgtccttgaattaataccatacatactttttaagcattaaggtttattgattcctttg |
27560361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 27560486 - 27560428
Alignment:
| Q |
127 |
gttacctactaaactggaatatcttttcttgacttacaccgctttgaatttaatgactt |
185 |
Q |
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| T |
27560486 |
gttacctactaaacttgaataccttttgttgatttacacctctttgaattgaatgactt |
27560428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 36668010 - 36667952
Alignment:
| Q |
127 |
gttacctactaaactggaatatcttttcttgacttacaccgctttgaatttaatgactt |
185 |
Q |
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| T |
36668010 |
gttacctactaaactggaatactgtttgtcgatttacacctctttgaatttaatgactt |
36667952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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