View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6268_high_19 (Length: 274)
Name: NF6268_high_19
Description: NF6268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6268_high_19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 28023024 - 28022751
Alignment:
| Q |
1 |
gcctcgttgatataatatgcatgaagaggacagtcatgcatcatttcaacattgagacgatgaagggtgaaagtatcaaggggaatgccccaatatcgtg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28023024 |
gcctcgttgatataatatgcatgaagaggacagtcatgcatcatttcaacattgagacgatgaagggtgaaagtatcaaggggaatgccccaataccgtg |
28022925 |
T |
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| Q |
101 |
aaactttgtcgcacaggtcactcaccttatcggtctccttcaccctcacatagccattgctgccatggccaagaaacttcactaaaacatgtagtttcag |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28022924 |
aaactttgttgcacaggtcactcaccttatcggtctccttcaccctcacatagccattgctgccatggccaagaaacttcactaaaacatgtagtttcag |
28022825 |
T |
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| Q |
201 |
gtctgatggcagtggatcaacaatgagagtaactgtttctgtttcatctccgcacaaagcatagaatccaatcc |
274 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28022824 |
gtctgatggcagcggatcaacaatgagagtaactgtttctgtttcatctccgcgcaaagcatagaatccaatcc |
28022751 |
T |
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