View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6268_high_2 (Length: 768)
Name: NF6268_high_2
Description: NF6268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6268_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 11 - 421
Target Start/End: Original strand, 6280872 - 6281283
Alignment:
| Q |
11 |
cataggatgctgaaacaccatgtggacttgctttagatatgatctcaaacaagtttagttcaattgcagctttcaatactgaattaaaaatcaatggttc |
110 |
Q |
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| T |
6280872 |
cataggatgctgaaacaccacgtggacttgctttagatatgatctcaaataagtttagttcaattgcagctttcaatactgaattaaaaaccaatggttc |
6280971 |
T |
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| Q |
111 |
aaatgaaagttgtaatgctaaaagacatgcattattatcatcttcagtgttagtggaattcattgttgcttttctttgtatgttg-ttgattgagttttt |
209 |
Q |
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| T |
6280972 |
aaatgaaagttgtaaagctaaaaggcatgcattattatcatcttcagtgttagtggaattcattgtttcttttctttgtatgttggttgcttgagttttt |
6281071 |
T |
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| Q |
210 |
aaccttttatggatgaaattattctacaccacatggttttgatttttgttgttaaattattattggtgcttttaattttatgagatgagattccgggtca |
309 |
Q |
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| T |
6281072 |
aaccttttatggatgaaattattctacaccatatggttttgatttttgttgttaaattattattggtgcttttaattttataagatgcgattccgggtca |
6281171 |
T |
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| Q |
310 |
aattttatgagtacgttcaattaattacttgaacacggcaatggtatattatattaaagagtcgtgtgttttttaaggaataataatgagttaggttaac |
409 |
Q |
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| T |
6281172 |
aattttatgagtacgttcaattaattacttgaacacggcaatggtatattatattaaagagtgatgtgttttttaaggaataataatgagttaggttaac |
6281271 |
T |
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| Q |
410 |
gagtgtcctaag |
421 |
Q |
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| T |
6281272 |
gagtgtcctaag |
6281283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 476 - 754
Target Start/End: Original strand, 6281337 - 6281623
Alignment:
| Q |
476 |
ggggataaatgcaatccttcaaacaatgacaaccctatttggtaatcaccaattgttgcttgattctttggttgaacatggtatagtttacctaattttg |
575 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||| |
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| T |
6281337 |
ggggataaatgcaatccttgaaataatgacaaccctatttggtaatcaccaattgttgcttgatgctttggtttaacatggtatagtttgcctaattttg |
6281436 |
T |
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| Q |
576 |
atagatacttcagatat------aattattttccgagttacggttttctttgagtttatggtataacaatttcgatattttgtagtcgagctagaatttg |
669 |
Q |
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| T |
6281437 |
atagatacttgagatatgtcttcaattattttcctagttacgattttctttgagtttatggtataacaatttcgatattttgtagtcgagttagaatttg |
6281536 |
T |
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| Q |
670 |
taaa--atgttacttttatttattcataacaaattaatattcaataatagatatcatatatacattacataacaaattataaacatg |
754 |
Q |
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| T |
6281537 |
tagagaatgttactcttatttattcataacaaatcaatattcaataatagatatcatatatacattacataacaaattataaacatg |
6281623 |
T |
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