View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6268_high_3 (Length: 649)

Name: NF6268_high_3
Description: NF6268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6268_high_3
NF6268_high_3
[»] chr4 (9 HSPs)
chr4 (11-633)||(54004318-54004932)
chr4 (11-423)||(53988594-53988995)
chr4 (32-109)||(8418258-8418336)
chr4 (36-112)||(17467935-17468012)
chr4 (58-111)||(24177997-24178050)
chr4 (28-112)||(28495428-28495513)
chr4 (66-103)||(47109766-47109803)
chr4 (54-113)||(30191759-30191819)
chr4 (66-113)||(52181130-52181178)
[»] chr3 (7 HSPs)
chr3 (28-113)||(29383057-29383143)
chr3 (28-112)||(16776795-16776880)
chr3 (66-112)||(15095242-15095289)
chr3 (32-113)||(20113325-20113408)
chr3 (36-113)||(12918754-12918832)
chr3 (28-113)||(35938408-35938490)
chr3 (66-113)||(27646252-27646300)
[»] chr5 (6 HSPs)
chr5 (28-113)||(26699360-26699445)
chr5 (28-113)||(26969093-26969178)
chr5 (32-113)||(30117156-30117238)
chr5 (31-112)||(37700137-37700219)
chr5 (66-113)||(39971057-39971105)
chr5 (58-113)||(33819253-33819309)
[»] chr1 (8 HSPs)
chr1 (28-113)||(5966616-5966702)
chr1 (35-113)||(50074453-50074532)
chr1 (28-113)||(26768428-26768514)
chr1 (28-92)||(15624804-15624868)
chr1 (36-113)||(4389652-4389730)
chr1 (58-110)||(35693108-35693161)
chr1 (58-92)||(4371702-4371736)
chr1 (28-113)||(46083910-46083995)
[»] scaffold0280 (1 HSPs)
scaffold0280 (28-93)||(270-335)
[»] chr2 (8 HSPs)
chr2 (28-112)||(4897651-4897736)
chr2 (28-112)||(4945045-4945130)
chr2 (28-112)||(12296337-12296422)
chr2 (32-113)||(12969554-12969636)
chr2 (28-92)||(27725601-27725665)
chr2 (36-91)||(21522929-21522984)
chr2 (58-93)||(26273494-26273529)
chr2 (33-86)||(14493726-14493779)
[»] chr7 (7 HSPs)
chr7 (28-91)||(28017009-28017072)
chr7 (28-113)||(18312232-18312318)
chr7 (63-112)||(20307481-20307530)
chr7 (36-113)||(30534748-30534826)
chr7 (36-113)||(32964311-32964389)
chr7 (59-113)||(47534843-47534897)
chr7 (32-112)||(2087201-2087282)
[»] chr8 (4 HSPs)
chr8 (32-113)||(30734688-30734770)
chr8 (28-107)||(24260862-24260942)
chr8 (28-93)||(30512831-30512897)
chr8 (58-93)||(19701167-19701202)
[»] scaffold0074 (1 HSPs)
scaffold0074 (37-92)||(55993-56048)
[»] chr6 (4 HSPs)
chr6 (28-91)||(8646113-8646176)
chr6 (36-113)||(6418568-6418646)
chr6 (66-113)||(2365039-2365087)
chr6 (36-92)||(2665640-2665696)
[»] scaffold0072 (1 HSPs)
scaffold0072 (36-86)||(47226-47276)
[»] scaffold0294 (1 HSPs)
scaffold0294 (58-113)||(11597-11653)


Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 11 - 633
Target Start/End: Complemental strand, 54004932 - 54004318
Alignment:
Q  11 caaaggggcatgtcggtaaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaagga-tcttgtaaaaagaga 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || | |||||||||||||    
T  54004932 caaaagggcatgtcggtaaagatataaaataaataggagaatattaataaataattaattaatgtacttgaaaatatcaaaagaatattgtaaaaagaga 54004833  T
Q  110 caaacnnnnnnn-aaaatggacttatatttaaagaactgtttgatggacttttgccct-ttttgtnnnnnnntaataa-taactgttcgaaaaatctgga 206  Q
    |||||        |||||||| |||||||||||||||||||||||| ||||||||||| ||||||        || || |||||||||||||||||||||    
T  54004832 caaacttttttttaaaatggatttatatttaaagaactgtttgatgcacttttgccctcttttgtaaaaaaaaaaaaaataactgttcgaaaaatctgga 54004733  T
Q  207 gggtctgtgagcaaagaagggggtcaggaaagtaataagcaccaaacatggctgattgggctgcatgcatgggcatgggcatgggtattcagaaaacgaa 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||            ||||||||||| |||    
T  54004732 gggtctgtgagcaaagaagggggtcaggaaagtaataagcaccaaacatggccgattgggctgcatgcatggg------------tattcagaaaatgaa 54004645  T
Q  307 tttgacacgtgacagtagcggttacctcaaaacggacacgtgtgtcgtttgtaaaccgccaacaaaacaaacaaaacaacgttgtccatacctttttcct 406  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  54004644 tttgacacgtgacagtagcggtaacctcaaaacggacacgtgtgtcgtttgtaaaccgccaacaaaacaaacaaaacaactttgtccatacctttttcct 54004545  T
Q  407 agacttctccaaatcttgtgcattttggtcggattcaaagaaattgaagaaaatggataacagaaatcatcgtttaagagttcaaaacaagaaaccaatt 506  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54004544 agacttctccaaatcttgtgcattttggtcggattcaaagaaaaagaagaaaatggataacagaaatcatcgtttaagagttcaaaacaagaaaccaatt 54004445  T
Q  507 aagcgcagcggaaagaaaccattggtgaagaagtttttggattatcttaagtctgatacttttttgtatgctcctcttctttctcctcaaccctccggct 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54004444 aagcgcagcggaaagaaaccattggtgaagaagtttttggattatcttaagtctgatacttttttgtatgctcctcttctttctcctcaaccctccggct 54004345  T
Q  607 ctggttttccatcacccaacaacttca 633  Q
    |||||||||||||||||||||||||||    
T  54004344 ctggttttccatcacccaacaacttca 54004318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 11 - 423
Target Start/End: Original strand, 53988594 - 53988995
Alignment:
Q  11 caaaggggcatgtcggtaaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaa-ggatcttgtaaaaagaga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||    
T  53988594 caaaggggcatgtcggtaaagatataaaataaataggagaatattgataaataattaattaatgtgcttgaaaatatcaaaaggatattgtaaaaagaga 53988693  T
Q  110 caaacnnnnnnn-aaaatggacttatatttaaagaactgtttgatggacttttgccct-ttttgtnnnnnnntaataataactgttcgaaaaatctggag 207  Q
    |||||        ||||||||||||||||||||||||||||||||| ||||||| ||| ||||||        |  ||||||||||||||||||||||||    
T  53988694 caaacttttttttaaaatggacttatatttaaagaactgtttgatgcacttttgtcctcttttgtaaaaaaaaacaaataactgttcgaaaaatctggag 53988793  T
Q  208 ggtctgtgagcaaagaagggggtcaggaaagtaataagcaccaaacatggctgattgggctgcatgcatgggcatgggcatgggtattcagaaaacgaat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||            ||||||||||| ||||    
T  53988794 ggtctgtgagcaaagaagggggtcaggaaagtaataagcaccaaacatggccgattgggctgcatgcatggg------------tattcagaaaatgaat 53988881  T
Q  308 ttgacacgtgacagtagcggttacctcaaaacggacacgtgtgtcgtttgtaaaccgccaacaaaacaaacaaaacaacgttgtccatacctttttccta 407  Q
    ||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53988882 ttgacacgtgacagtagcggtaacctcaaaacggacacgtgt--cgtttgtaaaccgccaacaaaacaaacaaaacaacgttgtccatacctttttccta 53988979  T
Q  408 gacttctccaaatctt 423  Q
    ||||||||||||||||    
T  53988980 gacttctccaaatctt 53988995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 8418258 - 8418336
Alignment:
Q  32 atataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaa-ggatcttgtaaaaagaga 109  Q
    |||||||||||||||| | || ||| |||| |||||||||||||||||||||||| |||| ||||||| ||||||||||    
T  8418258 atataaaataaataggggtatgttggtaaagaattaattaatgtacttgaaaataccaaatggatcttataaaaagaga 8418336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 17468012 - 17467935
Alignment:
Q  36 aaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaa-ggatcttgtaaaaagagacaa 112  Q
    |||||||||| | | || ||| |||| || ||||||||||||||||||||| |||| ||||||| ||||||| |||||    
T  17468012 aaaataaataagggtatgttggtaaagaaataattaatgtacttgaaaataccaaagggatcttataaaaagggacaa 17467935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 24177997 - 24178050
Alignment:
Q  58 taaataattaattaatgtacttgaaaatatcaaaggatcttgtaaaaagagaca 111  Q
    ||||||| ||||||||| |||||||||||||||| | |||| ||||||| ||||    
T  24177997 taaataaataattaatgcacttgaaaatatcaaaaggtcttataaaaagggaca 24178050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 112
Target Start/End: Complemental strand, 28495513 - 28495428
Alignment:
Q  28 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatca-aaggatcttgtaaaaagagacaa 112  Q
    |||||| ||||||||||||| | || ||| ||||||| ||||||||| ||||| ||||| || | ||||||| ||||||| |||||    
T  28495513 aaagatgtaaaataaataggggtatgttggtaaataaataattaatgaacttggaaataccagatggatcttataaaaagggacaa 28495428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 47109766 - 47109803
Alignment:
Q  66 taattaatgtacttgaaaatatcaaaggatcttgtaaa 103  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  47109766 taattaatgtacttgaaaataccaaaggatcttataaa 47109803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 30191819 - 30191759
Alignment:
Q  54 ttgataaataattaattaatgtacttgaaaatatcaaagga-tcttgtaaaaagagacaaa 113  Q
    |||||||| |||||||||||||||||  |||||||||| || |||| |||||| |||||||    
T  30191819 ttgataaagaattaattaatgtacttcgaaatatcaaatgagtcttataaaaaaagacaaa 30191759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 52181130 - 52181178
Alignment:
Q  66 taattaatgtacttgaaaatatcaaagga-tcttgtaaaaagagacaaa 113  Q
    ||||||||||||||| ||||||||||||| |||| ||||||| ||||||    
T  52181130 taattaatgtacttggaaatatcaaaggagtcttataaaaagggacaaa 52181178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 29383143 - 29383057
Alignment:
Q  28 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaa-ggatcttgtaaaaagagacaaa 113  Q
    |||||||||||||||||| | | || ||| |||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  29383143 aaagatataaaataaataagggtatgttggtaaagaattaattaatgtacttgaaaatatcaaagggatcttataaaaagagacaaa 29383057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 16776795 - 16776880
Alignment:
Q  28 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaa-ggatcttgtaaaaagagacaa 112  Q
    |||||||||||||||||||| | |||||| |||| |||||||||||||||||| ||||| |||| || |||| |||||||||||||    
T  16776795 aaagatataaaataaataggggtatattggtaaagaattaattaatgtacttggaaatagcaaaggggtcttataaaaagagacaa 16776880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 15095289 - 15095242
Alignment:
Q  66 taattaatgtacttgaaaatatcaaa-ggatcttgtaaaaagagacaa 112  Q
    |||||||||||||||||||||||||| ||||||| ||||||| |||||    
T  15095289 taattaatgtacttgaaaatatcaaagggatcttataaaaagggacaa 15095242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 20113325 - 20113408
Alignment:
Q  32 atataaaataaataggagaatattgataaataa-ttaattaatgtacttgaaaatatcaaag-gatcttgtaaaaagagacaaa 113  Q
    |||||||||||||||| |  ||||| |||| || |||| ||||||||||  ||||||||||| |||||| ||||||||||||||    
T  20113325 atataaaataaataggggtgtattggtaaaaaaattaagtaatgtactttgaaatatcaaagagatcttataaaaagagacaaa 20113408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 12918754 - 12918832
Alignment:
Q  36 aaaataaataggagaatattgataaataattaattaatgtacttgaaaatatc-aaaggatcttgtaaaaagagacaaa 113  Q
    |||||||||| | | || ||| |||| || ||||||||||||||||||||| | |||||||||| ||||||| ||||||    
T  12918754 aaaataaataagggtatgttggtaaagaaataattaatgtacttgaaaataccaaaaggatcttataaaaagggacaaa 12918832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 35938490 - 35938408
Alignment:
Q  28 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatc-aaaggatcttgtaaaaagagacaaa 113  Q
    |||||||||||||||||||| |  | ||| ||||||||    ||||||| ||||||||||| |||| ||||| ||||||||||||||    
T  35938490 aaagatataaaataaataggggtgtgttggtaaataat----taatgtatttgaaaatatcaaaagaatcttataaaaagagacaaa 35938408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 27646252 - 27646300
Alignment:
Q  66 taattaatgtacttgaaaatatc-aaaggatcttgtaaaaagagacaaa 113  Q
    ||||||||||||||||||||| | ||||| |||| ||||||||||||||    
T  27646252 taattaatgtacttgaaaataccaaaagggtcttataaaaagagacaaa 27646300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 26699445 - 26699360
Alignment:
Q  28 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaaggatcttgtaaaaagagacaaa 113  Q
    ||||||| |||||||||||| | ||||||||||||||||||||||| |||||  |||||||||||  | || ||||||||||||||    
T  26699445 aaagatagaaaataaataggggtatattgataaataattaattaatatacttcgaaatatcaaagagttttataaaaagagacaaa 26699360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 26969178 - 26969093
Alignment:
Q  28 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaaggatcttgtaaaaagagacaaa 113  Q
    ||||||| |||||||||||| | ||||||||||||||||||||||| |||||  |||||||||||  | || ||||||||||||||    
T  26969178 aaagatagaaaataaataggggtatattgataaataattaattaatatacttcgaaatatcaaagagttttataaaaagagacaaa 26969093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 30117238 - 30117156
Alignment:
Q  32 atataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaagga-tcttgtaaaaagagacaaa 113  Q
    |||||||||||||||  |  | ||| |||| |||||||||||||||||  ||||||||||||| |||| ||||||||||||||    
T  30117238 atataaaataaatagaggtttgttggtaaagaattaattaatgtacttacaaatatcaaaggagtcttataaaaagagacaaa 30117156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 37700219 - 37700137
Alignment:
Q  31 gatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaagga-tcttgtaaaaagagacaa 112  Q
    |||||||||||||||||   || ||| |||| |||||||||||||||| | ||||||||||||| |||| |||||||| ||||    
T  37700219 gatataaaataaatagggatatgttggtaaagaattaattaatgtactcggaaatatcaaaggagtcttataaaaagaaacaa 37700137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 66 - 113
Target Start/End: Complemental strand, 39971105 - 39971057
Alignment:
Q  66 taattaatgtacttgaaaatatcaaa-ggatcttgtaaaaagagacaaa 113  Q
    |||||||||||||||||||||||||| ||||||| ||||||| ||||||    
T  39971105 taattaatgtacttgaaaatatcaaagggatcttataaaaagggacaaa 39971057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 33819253 - 33819309
Alignment:
Q  58 taaataattaattaatgtacttgaaaatatcaaa-ggatcttgtaaaaagagacaaa 113  Q
    |||| |||||||||||||| ||| |||||||||| | ||||| ||||||||||||||    
T  33819253 taaaaaattaattaatgtatttggaaatatcaaatgaatcttataaaaagagacaaa 33819309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 5966702 - 5966616
Alignment:
Q  28 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaa-ggatcttgtaaaaagagacaaa 113  Q
    |||||||||||||||||| | | ||||||||||  | |||||||| |||||||||||||||||| | ||||| ||||||||||||||    
T  5966702 aaagatataaaataaataagggtatattgataatgagttaattaacgtacttgaaaatatcaaatgaatcttataaaaagagacaaa 5966616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 113
Target Start/End: Complemental strand, 50074532 - 50074453
Alignment:
Q  35 taaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaagga-tcttgtaaaaagagacaaa 113  Q
    ||||||||||||||| || ||| |||| |||||||||||||||||| ||||| ||||| | |||| ||||||||||||||    
T  50074532 taaaataaataggagtatgttggtaaagaattaattaatgtacttggaaataccaaagaagtcttataaaaagagacaaa 50074453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 26768514 - 26768428
Alignment:
Q  28 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaa-ggatcttgtaaaaagagacaaa 113  Q
    |||||||||||||||||||| | || ||| |||| |||||||||||||||||  |||||  ||| ||||||| ||||||||||||||    
T  26768514 aaagatataaaataaataggggtatgttggtaaagaattaattaatgtacttagaaatacaaaagggatcttataaaaagagacaaa 26768428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 15624804 - 15624868
Alignment:
Q  28 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaag 92  Q
    |||||||||||||||||||  | || ||| |||| |||||||||||||||||||||||| |||||    
T  15624804 aaagatataaaataaatagaggtatgttggtaaagaattaattaatgtacttgaaaataccaaag 15624868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 4389730 - 4389652
Alignment:
Q  36 aaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaag-gatcttgtaaaaagagacaaa 113  Q
    |||||||||| ||| |  ||| |||| || ||||||||||||||| ||||||||||| |||||| ||||||||||||||    
T  4389730 aaaataaataagagtaggttggtaaagaaataattaatgtacttggaaatatcaaagagatcttataaaaagagacaaa 4389652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 35693161 - 35693108
Alignment:
Q  58 taaataattaattaatgtacttgaaaatatcaaa-ggatcttgtaaaaagagac 110  Q
    |||| ||||||||||||| ||||||||||||||| ||||||| |||||||||||    
T  35693161 taaaaaattaattaatgtgcttgaaaatatcaaagggatcttataaaaagagac 35693108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 58 - 92
Target Start/End: Original strand, 4371702 - 4371736
Alignment:
Q  58 taaataattaattaatgtacttgaaaatatcaaag 92  Q
    ||||||| |||||||||||||||||||||||||||    
T  4371702 taaataaataattaatgtacttgaaaatatcaaag 4371736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 46083995 - 46083910
Alignment:
Q  28 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaagga-tcttgtaaaaagagacaaa 113  Q
    ||||||||||||||||| || | |||||| |||| | |||||||||||  |||||||||||||| ||  ||| ||||||||||||||    
T  46083995 aaagatataaaataaatggg-gtatattggtaaaaagttaattaatgtgtttgaaaatatcaaatgaggcttataaaaagagacaaa 46083910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 270 - 335
Alignment:
Q  28 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaagg 93  Q
    |||||||||||||||||| ||| || ||| |||||||||||||||||||| |||||||||| ||||    
T  270 aaagatataaaataaatatgagtatgttggtaaataattaattaatgtacatgaaaatatctaagg 335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 4897651 - 4897736
Alignment:
Q  28 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaag-gatcttgtaaaaagagacaa 112  Q
    |||||||||||||||||||| | || ||| |||| |||||||||||||||||  ||||||||||| | |||| |||||||||||||    
T  4897651 aaagatataaaataaataggggtatgttggtaaagaattaattaatgtacttcgaaatatcaaagaggtcttataaaaagagacaa 4897736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 4945045 - 4945130
Alignment:
Q  28 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaag-gatcttgtaaaaagagacaa 112  Q
    |||||||||||||||||||| | || ||| |||| |||||||||||||||||  ||||||||||| | |||| |||||||||||||    
T  4945045 aaagatataaaataaataggggtatgttggtaaagaattaattaatgtacttcgaaatatcaaagaggtcttataaaaagagacaa 4945130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 12296337 - 12296422
Alignment:
Q  28 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaag-gatcttgtaaaaagagacaa 112  Q
    |||||||||||||||||||| | || ||| |||| |||||||||||||||||| |||||||||||   |||| |||||||||||||    
T  12296337 aaagatataaaataaataggggtatgttggtaaagaattaattaatgtacttggaaatatcaaagatgtcttataaaaagagacaa 12296422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 12969636 - 12969554
Alignment:
Q  32 atataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaa-ggatcttgtaaaaagagacaaa 113  Q
    |||||||||||||||| | || ||| |||| ||||||||||| || ||||||||| |||| || |||| ||||||||||||||    
T  12969636 atataaaataaataggggtatgttggtaaagaattaattaatatatttgaaaataacaaaggggtcttataaaaagagacaaa 12969554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 27725601 - 27725665
Alignment:
Q  28 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaag 92  Q
    |||||| ||||||||||| | | | ||||||||| || |||||||||||||| ||||||||||||    
T  27725601 aaagatgtaaaataaataagggtagattgataaagaaataattaatgtacttaaaaatatcaaag 27725665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 21522929 - 21522984
Alignment:
Q  36 aaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaa 91  Q
    |||||||||| | | || ||||||||||| ||||||||||| ||||||||||||||    
T  21522929 aaaataaataagggtatgttgataaataaataattaatgtaattgaaaatatcaaa 21522984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 93
Target Start/End: Original strand, 26273494 - 26273529
Alignment:
Q  58 taaataattaattaatgtacttgaaaatatcaaagg 93  Q
    |||| |||||||||||||||||||||||||||||||    
T  26273494 taaagaattaattaatgtacttgaaaatatcaaagg 26273529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 14493726 - 14493779
Alignment:
Q  33 tataaaataaataggagaatattgataaataattaattaatgtacttgaaaata 86  Q
    ||||||||||||||| | || ||| |||| |||||||||||||| |||||||||    
T  14493726 tataaaataaataggggtatgttggtaaagaattaattaatgtatttgaaaata 14493779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 28017072 - 28017009
Alignment:
Q  28 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaa 91  Q
    |||||||||||||||||||| |  ||||||| || |||||||||||||||||||||||| ||||    
T  28017072 aaagatataaaataaataggggtgtattgatcaagaattaattaatgtacttgaaaataccaaa 28017009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 18312318 - 18312232
Alignment:
Q  28 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatc-aaaggatcttgtaaaaagagacaaa 113  Q
    ||||||||||||||||||| |  || ||| |||| |||||||||||||| ||||||||||| |||| ||||| |||||||| |||||    
T  18312318 aaagatataaaataaatagaaatatgttggtaaaaaattaattaatgtatttgaaaatatcaaaagtatcttataaaaagaaacaaa 18312232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 20307481 - 20307530
Alignment:
Q  63 aattaattaatgtacttgaaaatatcaaaggatcttgtaaaaagagacaa 112  Q
    |||||||||||||| |||||||||||| |||||||| |||||||||||||    
T  20307481 aattaattaatgtatttgaaaatatcacaggatcttataaaaagagacaa 20307530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 30534826 - 30534748
Alignment:
Q  36 aaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaagga-tcttgtaaaaagagacaaa 113  Q
    |||||||||| | | || ||| |||| || ||||||||||||||||||||||||||||| |||| ||||||| ||||||    
T  30534826 aaaataaataagggtatgttggtaaagaaataattaatgtacttgaaaatatcaaaggagtcttataaaaagggacaaa 30534748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 32964311 - 32964389
Alignment:
Q  36 aaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaagga-tcttgtaaaaagagacaaa 113  Q
    |||||||||| | | || ||| |||| || ||||||||||||||||||||| ||||||| |||| ||||||| ||||||    
T  32964311 aaaataaataagggtatgttggtaaagaaataattaatgtacttgaaaataccaaaggactcttataaaaagggacaaa 32964389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 47534843 - 47534897
Alignment:
Q  59 aaataattaattaatgtacttgaaaatatcaaaggatcttgtaaaaagagacaaa 113  Q
    |||||||||||||||||| ||||||||| |||||| | || ||||||| ||||||    
T  47534843 aaataattaattaatgtagttgaaaatagcaaagggttttataaaaagggacaaa 47534897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 2087201 - 2087282
Alignment:
Q  32 atataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaag-gatcttgtaaaaagagacaa 112  Q
    |||||||||||||| | |  | ||| |||| ||||||||||||||||||||||||  ||||   ||||||||||||||||||    
T  2087201 atataaaataaataagggtgtgttggtaaaaaattaattaatgtacttgaaaatactaaagatgtcttgtaaaaagagacaa 2087282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 30734688 - 30734770
Alignment:
Q  32 atataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaagga-tcttgtaaaaagagacaaa 113  Q
    |||||||||||||||| |  |||||||||| | ||||||| ||||||||||||||||||| || |||| ||||||| ||||||    
T  30734688 atataaaataaataggggtgtattgataaagagttaattactgtacttgaaaatatcaaatgagtcttataaaaagtgacaaa 30734770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 24260862 - 24260942
Alignment:
Q  28 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaa-ggatcttgtaaaaaga 107  Q
    |||||||||||||||||| | | || ||| |||| |||||||||||| ||||| |||||||||| ||||||| ||||||||    
T  24260862 aaagatataaaataaataagggtatgttggtaaaaaattaattaatgcacttggaaatatcaaagggatcttataaaaaga 24260942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 30512897 - 30512831
Alignment:
Q  28 aaagatataaaataaataggagaatattgataaataa-ttaattaatgtacttgaaaatatcaaagg 93  Q
    |||||||||||||||||||| | || ||| |||| || |||||||||||||||||||||| ||||||    
T  30512897 aaagatataaaataaataggggtatgttggtaaaaaaattaattaatgtacttgaaaataccaaagg 30512831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 93
Target Start/End: Original strand, 19701167 - 19701202
Alignment:
Q  58 taaataattaattaatgtacttgaaaatatcaaagg 93  Q
    |||| |||||||||||||||||||||||||||||||    
T  19701167 taaagaattaattaatgtacttgaaaatatcaaagg 19701202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 37 - 92
Target Start/End: Complemental strand, 56048 - 55993
Alignment:
Q  37 aaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaag 92  Q
    ||||||||||||| || |||||||| ||||||| |||||||||||||||| |||||    
T  56048 aaataaataggagtatgttgataaagaattaataaatgtacttgaaaataccaaag 55993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 8646113 - 8646176
Alignment:
Q  28 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaa 91  Q
    |||||||||||||||||||| | ||  || |||| |||||||||||||||||| ||||| ||||    
T  8646113 aaagatataaaataaataggggtatggtggtaaaaaattaattaatgtacttggaaatagcaaa 8646176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 6418568 - 6418646
Alignment:
Q  36 aaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaag-gatcttgtaaaaagagacaaa 113  Q
    |||||||||| | | || ||| |||| || ||||||||||||||||||||||||||| | |||| ||||||| ||||||    
T  6418568 aaaataaataagggtatgttggtaaagaaataattaatgtacttgaaaatatcaaagaggtcttataaaaagggacaaa 6418646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 2365039 - 2365087
Alignment:
Q  66 taattaatgtacttgaaaatatcaaagga-tcttgtaaaaagagacaaa 113  Q
    |||||| |||||||||||||||||||||| |||| ||||||| ||||||    
T  2365039 taattagtgtacttgaaaatatcaaaggagtcttataaaaagtgacaaa 2365087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 2665640 - 2665696
Alignment:
Q  36 aaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaag 92  Q
    |||| ||||||||| || |||||||| ||||||| ||| |||||||||||| |||||    
T  2665640 aaaaaaaataggagtatgttgataaagaattaataaatatacttgaaaataccaaag 2665696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 47276 - 47226
Alignment:
Q  36 aaaataaataggagaatattgataaataattaattaatgtacttgaaaata 86  Q
    |||||||||||||| || ||| |||| ||||||| ||||||||||||||||    
T  47276 aaaataaataggagtatgttggtaaagaattaataaatgtacttgaaaata 47226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 11597 - 11653
Alignment:
Q  58 taaataattaattaatgtacttgaaaatatcaaa-ggatcttgtaaaaagagacaaa 113  Q
    ||||||| |||||||||||||| |||||| |||| || |||| ||||||||||||||    
T  11597 taaataaataattaatgtacttaaaaataccaaaggggtcttataaaaagagacaaa 11653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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