View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6268_high_4 (Length: 553)
Name: NF6268_high_4
Description: NF6268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6268_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 232 - 535
Target Start/End: Complemental strand, 1603798 - 1603495
Alignment:
| Q |
232 |
tgttcgtgcaagttgaagtaagaagagtcttctggaatcaaaaacaaatcccatcccaaacaacgcgnnnnnnnnngcttccaataatcacttcttgctc |
331 |
Q |
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| T |
1603798 |
tgttcgtgcaagttgaagtaagaagagtcttctggaatcaaaaacaaatcccatcccaaacaacgcgaaaaaaaaagcttccaataatcacttcttgctc |
1603699 |
T |
|
| Q |
332 |
aaataacgttttggtaactaacttcacttccttcttctttgaacaaaactatcttctaactcagcttctttgtactannnnnnnaagtttaatttatgat |
431 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1603698 |
aaatcacgttttggtaactaacttcacttccttcttctttgaacaaaactatcttctaactcagcttctttgtactatttttttaagtttaatttatgat |
1603599 |
T |
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| Q |
432 |
taattatacttaagagcttctaattcactctatttatatctatgagattcacttgcttttattgtgttattattactaattactagttaaataagttagt |
531 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1603598 |
taattatacttaagagcttctaattcactctatttatatctatgagattcacttgcttttattgtgttattattactaattactagttaaataagttagt |
1603499 |
T |
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| Q |
532 |
agtt |
535 |
Q |
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|||| |
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| T |
1603498 |
agtt |
1603495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 1604019 - 1603833
Alignment:
| Q |
11 |
cacagaccagaaatattggttaggcacgtgcgtagggtagaactaaatgcaaccggacacgtgtcagtccctaaaagcaaaactgattgtgaaccaatag |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1604019 |
cacaaaccagaaatattggttaggcacgtgcgtagggtagaactaaatgcaaccggacacgtgtcagtccctaaaagcaaaactgattgtggaccaatag |
1603920 |
T |
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| Q |
111 |
aaatacagtaactgatcggatcttaaacacccacctcccaaccacgaacaatatttccatgccacgtgtcggtttctccgtcatacc |
197 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1603919 |
aaatacagtaactgatcggatcttaaacactcacctcccaaccacgaacaatatttccatgccacgtgtcggtttctccgtcatacc |
1603833 |
T |
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