View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6268_high_5 (Length: 536)
Name: NF6268_high_5
Description: NF6268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6268_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 6e-94; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 38185043 - 38184853
Alignment:
| Q |
16 |
gatcaaactaaggagatgcagaagagcaagccagcagcggggacgtgttcgcggtgcggcggtggtgcaagtgtggcggacatgaagacagccacaaggg |
115 |
Q |
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| T |
38185043 |
gatcaaactaaggagatgcagaagagcaagccagcagcggggacgtgttcacggtgcggcggtggtgcaagtgtggcggacatgaagacagccacaaggt |
38184944 |
T |
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| Q |
116 |
tttgctatgtcccattttatgtgaaatcttggaaagccattgtttgcaccttttgtggagctactcttcgttcttaccatgactaagatac |
206 |
Q |
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| T |
38184943 |
tttgctatgtcccattttatgtgaaatcttggaaagccatcgtttgtaccttttgtggagctactcttcgttcttaccatgactaagatac |
38184853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 268 - 388
Target Start/End: Complemental strand, 38184794 - 38184674
Alignment:
| Q |
268 |
ataagtgtagtagctactagctacttgctgctttttaatttgtactaacacatggatattgaattcaattatccatgatcatgaaaatgagatctttatg |
367 |
Q |
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| T |
38184794 |
ataagtgtggtagctactagctacttgctgctttttaatttgtactaacacatggatattgaattcaattatccatgatcatgaaaatgagatctttatg |
38184695 |
T |
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| Q |
368 |
ttccaacttccaactctttct |
388 |
Q |
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| T |
38184694 |
ttccaacttccaactctttct |
38184674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 414 - 524
Target Start/End: Complemental strand, 38184629 - 38184520
Alignment:
| Q |
414 |
ctcacttttctcaagttggaagttggagctccttatctacaattttaggtcctatgtgcttagttttggtgagtcaattcaaataacatatatttatctt |
513 |
Q |
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| T |
38184629 |
ctcacttttctcaagttggaagttggaactccttttctacaattttaggtcctgtgtatttggttttggtaaatcaattcaaataac-tatatttatctt |
38184531 |
T |
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| Q |
514 |
gtgcaatttct |
524 |
Q |
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| T |
38184530 |
gtgcaatttct |
38184520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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