View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6268_high_8 (Length: 430)
Name: NF6268_high_8
Description: NF6268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6268_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 185 - 411
Target Start/End: Complemental strand, 24202667 - 24202443
Alignment:
| Q |
185 |
gtgagaaagaaaatgaaagggaactttgtgtgaataacctttccactcaatttgggtcttagtgaatgtgctttctcacacaatgatacagcttcaagag |
284 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||| ||| ||||| |||||||| | |
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| T |
24202667 |
gtgacaaagaaaatgaaagggaactttgtgtgaataaccttcccactcaatttcgctcttagtgaatgtgctttctcacgcaaggatacggcttcaagtg |
24202568 |
T |
|
| Q |
285 |
ttgcatcttttcatcgcttcaactgtgctttcatcatgcccatttctttagttaaagttgaattcatcacacgaaactcaactttgatatcttttttatc |
384 |
Q |
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|||||||| |||||||||||||||||| | |||||| ||||||||||||| |||||||||| ||| ||||||||||||||||||||||| |||| || |
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| T |
24202567 |
ctgcatcttctcatcgcttcaactgtgcatccatcattcccatttctttagataaagttgaagccataacacgaaactcaactttgatatc--ttttgtc |
24202470 |
T |
|
| Q |
385 |
cctgaaacatttaatattgtaagaacc |
411 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
24202469 |
cctgaaacatttaatattgtaagaacc |
24202443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 24203114 - 24202953
Alignment:
| Q |
12 |
atgagagtccatgtaagaaaatattatcaacccgaagaagctattgcgggtacgtaatggttgatttacgccgaacccaaattct--aagtaccacattt |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||| ||||||||||| ||||||||||||| |
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| T |
24203114 |
atgagagtccatgtaagaaaatattatcaacccgaagaagctattgcgggttcgtaagggttgatttatgccgtacccaaattctaaaagtaccacattt |
24203015 |
T |
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| Q |
110 |
tatcatttactaaccacattgttttctatatacaacaggcatgatttattacaacaaaattg |
171 |
Q |
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| T |
24203014 |
tatcatttactaatcatattgttttatatatacagtaggcatgatttattacaaccaaattg |
24202953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 5e-60; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 185 - 409
Target Start/End: Original strand, 36668397 - 36668619
Alignment:
| Q |
185 |
gtgagaaagaaaatgaaagggaactttgtgtgaataacctttccactcaatttgggtcttagtgaatgtgctttctcacacaatgatacagcttcaagag |
284 |
Q |
| |
|
|||||||||||||||||| || | ||||||||||||||||| ||||||||||| |||||| |||||||||||| ||| |||||||||||||||| ||| |
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| T |
36668397 |
gtgagaaagaaaatgaaatggcagtttgtgtgaataaccttcccactcaatttctctcttagcgaatgtgctttcgcacgcaatgatacagcttcatgag |
36668496 |
T |
|
| Q |
285 |
ttgcatcttttcatcgcttcaactgtgctttcatcatgcccatttctttagttaaagttgaattcatcacacgaaactcaactttgatatcttttttatc |
384 |
Q |
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||||||||| |||||||||||||||| || |||||| ||||||||||||| ||| | |||| |||||||| ||||||| |||||||||| |||| || |
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| T |
36668497 |
ctgcatctttccatcgcttcaactgtgtttccatcatccccatttctttagataaggctgaagacatcacaccaaactcagctttgatatc--ttttctc |
36668594 |
T |
|
| Q |
385 |
cctgaaacatttaatattgtaagaa |
409 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
36668595 |
cctgaaacatttaatattgtaagaa |
36668619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 185 - 409
Target Start/End: Original strand, 27561526 - 27561746
Alignment:
| Q |
185 |
gtgagaaagaaaatgaaagggaactttgtgtgaataacctttccactcaatttgggtcttagtgaatgtgctttctcacacaatgatacagcttcaagag |
284 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | || | ||||||||||||||||| ||||| |||||||| ||||| |
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| T |
27561526 |
gtgagaaagaaaatgaaagggaagtttgtgtgaataaccttcccactcaatttcg--ctgaatgaatgtgctttctcacgcaatgctacagctttaagag |
27561623 |
T |
|
| Q |
285 |
ttgcatcttttcatcgcttcaactgtgctttcatcatgcccatttctttagttaaagttgaattcatcacacgaaactcaactttgatatcttttttatc |
384 |
Q |
| |
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||||||||| ||||||||||||||| || |||||| ||||||||||||| ||||| |||| ||||||||||||||| |||||||||| ||| || |
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| T |
27561624 |
ctgcatctttcgatcgcttcaactgtgtttccatcatccccatttctttagataaagctgaagatatcacacgaaactcagctttgatatc--atttctc |
27561721 |
T |
|
| Q |
385 |
cctgaaacatttaatattgtaagaa |
409 |
Q |
| |
|
||| |||| |||||||||||||||| |
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| T |
27561722 |
cctaaaacgtttaatattgtaagaa |
27561746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 309
Target Start/End: Complemental strand, 36672910 - 36672831
Alignment:
| Q |
230 |
ctcaatttgggtcttagtgaatgtgctttctcacacaatgatacagcttcaagagttgcatcttttcatcgcttcaactg |
309 |
Q |
| |
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|||||||| | ||||||| || |||||||||||||||||||||| ||||||||| | ||||||| |||| ||||||||| |
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| T |
36672910 |
ctcaatttcgctcttagtaaaactgctttctcacacaatgatacaacttcaagagctacatctttccatcacttcaactg |
36672831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 187 - 409
Target Start/End: Original strand, 29410931 - 29411151
Alignment:
| Q |
187 |
gagaaagaaaatgaaagggaactttgtgtgaataacctttccactcaatttgggtcttagtgaatgtgctttctcacacaatgatacagcttcaagagtt |
286 |
Q |
| |
|
||||||||||||||||||| ||||| || |||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||| | |
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| T |
29410931 |
gagaaagaaaatgaaagggtactttatgcgaataacctttccactcaatttttctcttagtgaatgcgctttctcacgtaatgatacagcttcaagagct |
29411030 |
T |
|
| Q |
287 |
gcatcttttcatcgcttcaactgtgctttcatcatgcccatttctttagttaaagttgaattcatcacacgaaactcaactttgatatcttttttatccc |
386 |
Q |
| |
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|||||||| |||||||||| ||| || | |||||| ||||||||||||| ||||| |||| ||||||||||||||| ||||||| || |||| |||| |
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| T |
29411031 |
gcatctttccatcgcttcacctgcgcgtccatcatccccatttctttagataaagctgaagccatcacacgaaactcggctttgatgtc--ttttctccc |
29411128 |
T |
|
| Q |
387 |
tgaaacatttaatattgtaagaa |
409 |
Q |
| |
|
||||| |||||| | |||||||| |
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|
| T |
29411129 |
tgaaaaatttaacagtgtaagaa |
29411151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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