View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6268_low_11 (Length: 409)
Name: NF6268_low_11
Description: NF6268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6268_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 12 - 400
Target Start/End: Original strand, 52016728 - 52017117
Alignment:
| Q |
12 |
tttttacaatgtcattcttcttgtcagcaagttttacattgccaagcctttcttgtattggacttttaaagagttaaattttgcccttctattttcacag |
111 |
Q |
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| T |
52016728 |
tttttacattgtcattcttcttgtcagcaagttttacattgtcaagcctttcttgtattggacttttgaagagttaaattttgcccttctattttcacag |
52016827 |
T |
|
| Q |
112 |
ctttgctaattgtgagctgcgttccgtggtcatcattgatagggggtgagcatccatcctatttacagaataacttatactcattactcaaacttctgca |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
52016828 |
ctttgctaattgtgagctgcgttccgtggtcatcattgatagggggtgagcatccatcctatttacagaataacttatactcagtactcaaacttctgca |
52016927 |
T |
|
| Q |
212 |
caaaattcagttttgtgtattcatttttacaggacgattggatcagatgagtcctctaccaactttcctggcaaaattccacagggccttgaccttccca |
311 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52016928 |
caaaattcag--ttgtgtattcatttttacaggacgattggatcagatgagtcctctaccaactttcctggcaaaattccacagggccttgaccttccca |
52017025 |
T |
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| Q |
312 |
gtgatgttgctgacgagaaactttctggaagtgggccatcaaagtaac---atgatgagcttttctcctgtcaacatttcaagatgatgatg |
400 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52017026 |
gtgatgttgctgacgagaaactttctgggagtgggccatcaaagtaacatgatgatgagcttttctcctgtcaacatttcaagatgatgatg |
52017117 |
T |
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