View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6268_low_14 (Length: 362)
Name: NF6268_low_14
Description: NF6268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6268_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 17455492 - 17455808
Alignment:
| Q |
16 |
caaatgacaagaatatggggacagtcagtgccattgttacaatggtaaatattccttgaagaacgatgtacatcagcaagcgattttgatccccaagcaa |
115 |
Q |
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| T |
17455492 |
caaatgacaagaatatggggacagtcagtgccattgttacaatggtaaatattccttgaagaacgatgtacatcagcaagcgattttgatccccaagcaa |
17455591 |
T |
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| Q |
116 |
cccacttaagtgccaccatacattgtttgctttcttagcttttcttgagaattccctgcaaaacattgaagtcgaaaatgtgaaagaaaagtgaagtgca |
215 |
Q |
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| T |
17455592 |
cccacttaagtgccaccatacattgtttgctttcttagcttttcttgagagttccctgtaaaacattgaagtcgaaaatgtgaaagaaaagtgaagtgca |
17455691 |
T |
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| Q |
216 |
taaactagtggtcaaagatacagacattaaagttacccaagtcagtttgtttatttatatacaagtcatttttatggtgagtataaagacaaataatata |
315 |
Q |
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| T |
17455692 |
taaactagtggtcaaagatacagacattaaagttaccttagtcagtttgtttatttatatacaagtcatttttacggtgagtataaagacaaataatata |
17455791 |
T |
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| Q |
316 |
gtacctatctcgactct |
332 |
Q |
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| T |
17455792 |
gtacctatctcgactct |
17455808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 17461529 - 17461338
Alignment:
| Q |
19 |
atgacaagaatatggggacagtcagtgccattgttacaatggtaaatattccttgaagaacgatgtacatcagcaagcgattttgatccccaagcaaccc |
118 |
Q |
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| T |
17461529 |
atgagaagaatatggggacagtcagtgccatggttgcaatggtaaatatgctttgaagaacgatgtacatcagcaagcgattttgatccccaagcaaccc |
17461430 |
T |
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| Q |
119 |
acttaagtgccaccatacattgtttgctttcttagcttttcttgagaattccctgcaaaacattgaagtcgaaaatgtgaaagaaaagtgaa |
210 |
Q |
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| T |
17461429 |
acttaagcgccaccatacattgtttgctttcttagctttttttgagagttccctgtaaaaggttgaaatcaacaatgtgaaagaaaagtgaa |
17461338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 52142962 - 52142793
Alignment:
| Q |
19 |
atgacaagaatatggggacagtcagtgccattgttacaatggtaaatattccttgaagaacgatgtacatcagcaagcgattttgatccccaagcaaccc |
118 |
Q |
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| T |
52142962 |
atgacaggaatatggggacagccagtgccatggttgcaatggtaaatatgccttgtagaaaaatgtacattagcatgcgattttgatccccaaatagccc |
52142863 |
T |
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| Q |
119 |
acttaagtgccaccatacattgtttgctttcttagcttttcttgagaattccctgcaaaacattgaagtc |
188 |
Q |
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| T |
52142862 |
acttaggcgccaccatatattgtttgctttcttagctttttttgagagttccctgtgaaagattgaagtc |
52142793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 774866 - 774964
Alignment:
| Q |
124 |
agtgccaccatacattgtttgctttcttagcttttcttgagaattccctgcaaaacattgaagtcgaaaatgtgaaagaaaagtgaagtgcataaacta |
222 |
Q |
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| T |
774866 |
agtgccaccatacattgtttgctttcttagcttttcttgagagttccctgtaaaacattgaagtcaacaatgtgaaagaaaagtgaagtgcataaacta |
774964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 775196 - 775245
Alignment:
| Q |
220 |
ctagtggtcaaagatacagacattaaagttacccaagtcagtttgtttat |
269 |
Q |
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| T |
775196 |
ctagtggtcaaagatacaaacattaaagttacaaaagtcagtttgattat |
775245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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