View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6268_low_17 (Length: 297)

Name: NF6268_low_17
Description: NF6268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6268_low_17
NF6268_low_17
[»] chr3 (2 HSPs)
chr3 (17-278)||(8341535-8341796)
chr3 (76-276)||(26727136-26727336)
[»] scaffold0017 (2 HSPs)
scaffold0017 (27-276)||(173463-173712)
scaffold0017 (27-276)||(168454-168703)
[»] chr1 (5 HSPs)
chr1 (51-276)||(44786005-44786230)
chr1 (27-276)||(44611355-44611604)
chr1 (125-276)||(44144513-44144664)
chr1 (44-224)||(35898699-35898879)
chr1 (41-190)||(11544994-11545143)
[»] scaffold0061 (1 HSPs)
scaffold0061 (27-276)||(30089-30338)
[»] chr2 (2 HSPs)
chr2 (77-276)||(29228864-29229063)
chr2 (77-276)||(29342163-29342362)
[»] chr5 (2 HSPs)
chr5 (27-256)||(29508253-29508482)
chr5 (109-187)||(20761969-20762047)


Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 278
Target Start/End: Complemental strand, 8341796 - 8341535
Alignment:
Q  17 tgaatcgtgtagatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcg 116  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8341796 tgaatggtgtagatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatctgcagttggaccgtccttccatgcg 8341697  T
Q  117 gacaacatgccataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8341696 gacaacatgccataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagt 8341597  T
Q  217 tgaacccagcaatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttccc 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8341596 tgaacccagcaatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttccc 8341535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 76 - 276
Target Start/End: Complemental strand, 26727336 - 26727136
Alignment:
Q  76 tccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctc 175  Q
    |||||||||||||||| ||| || || | |||||||||| |||||| |||||||| |||||| ||| |||||||||||| ||||||||||| ||||||||    
T  26727336 tccatttgcagcaatctgcattttgatcatccttccatgtggacaaaatgccatactcatcttgaaggccttgtttgaatgtgaggagtgcatgtctctc 26727237  T
Q  176 cctctctttgcactttgtatcgccattaattatttttgagttgaacccagcaatgaaggacaacaccaacaatgcatggaatgtaataatagtatagttt 275  Q
    |||||||||||||||  | || || ||  | ||| |||||||||||||| ||||| | ||||||||||||||||||| |||| ||| |||| ||||||||    
T  26727236 cctctctttgcacttcttgtctccgttcttcattgttgagttgaacccaacaatggaagacaacaccaacaatgcatagaatataagaataatatagttt 26727137  T
Q  276 c 276  Q
    |    
T  26727136 c 26727136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 27 - 276
Target Start/End: Complemental strand, 173712 - 173463
Alignment:
Q  27 agatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgc 126  Q
    ||||||||  ||| ||||||||| ||||   |||||||||||| ||| |||||||||||||||||  || || ||||| ||||||||| |||||||||||    
T  173712 agatcaagactttgaacataaccagtttcgatgttgcattgaactcccttccatttgcagcaatcttcattttgaccgcccttccatgtggacaacatgc 173613  T
Q  127 cataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaacccagc 226  Q
    ||||||||||| ||| ||||||||||||||||||||||||| ||||||| ||||||||||||||  | || |||||  || || || ||||||||||| |    
T  173612 cataatcatcttgaaggccttgtttgaacgtgaggagtgcgcgtctctctctctctttgcacttcatgtctccattctttgttgttaagttgaacccaac 173513  T
Q  227 aatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttc 276  Q
    |||||||||||||||||||| |||||| |||||||||||| |||||||||    
T  173512 aatgaaggacaacaccaacagtgcatgtaatgtaataatattatagtttc 173463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 27 - 276
Target Start/End: Complemental strand, 168703 - 168454
Alignment:
Q  27 agatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgc 126  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||| ||||| | |||||||||| ||||||||| |    
T  168703 agatcaagcttttcaacataaccggtttgattgttgcattgaactcccttccatttgcagcaatctgcatttggatcctccttccatgtggacaacatac 168604  T
Q  127 cataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaacccagc 226  Q
    |||| |||||| ||| ||||||||| || |||| |||||  ||||||||||| |||||||||| ||| || |||||  || ||  ||||||||||||| |    
T  168603 catagtcatcttgaaggccttgtttcaaagtgacgagtgaatgtctctccctttctttgcactgtgtgtctccattctttgttgctgagttgaacccaac 168504  T
Q  227 aatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttc 276  Q
    |||| || ||||||| ||||||||||| ||||||  |||| |||||||||    
T  168503 aatggagaacaacactaacaatgcatgtaatgtagcaatattatagtttc 168454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 51 - 276
Target Start/End: Original strand, 44786005 - 44786230
Alignment:
Q  51 gtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcgaacgccttgtt 150  Q
    ||||| ||||||||||||| ||||| ||||||||| ||||| ||| |||||||||| ||| ||| |||||||||||||||||||||| ||| ||||||||    
T  44786005 gtttggttgttgcattgaactccttcccatttgcaacaatctgcatttggaccgtctttcgatgtggacaacatgccataatcatcttgaatgccttgtt 44786104  T
Q  151 tgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaacccagcaatgaaggacaacaccaacaatgc 250  Q
    |||| ||||||||||| |||||||| ||| ||||||||||||| || || ||   | || ||||||||||||||||||||||||| ||||||||||||||    
T  44786105 tgaatgtgaggagtgcttgtctctcactcactttgcactttgtgtctcccttctcttttattgagttgaacccagcaatgaaggagaacaccaacaatgc 44786204  T
Q  251 atggaatgtaataatagtatagtttc 276  Q
    ||| |||||||||||| |||||||||    
T  44786205 atgtaatgtaataatattatagtttc 44786230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 27 - 276
Target Start/End: Complemental strand, 44611604 - 44611355
Alignment:
Q  27 agatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgc 126  Q
    ||||||||  ||| ||||||||| |||||| |||||||||||| ||| ||||||||||||||||| |||  || ||| |||||||||| ||||||||| |    
T  44611604 agatcaagactttgaacataaccagtttgaatgttgcattgaactcccttccatttgcagcaatctgcatctgaaccctccttccatgtggacaacatac 44611505  T
Q  127 cataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaacccagc 226  Q
    |||| |||||| ||| | ||||||| ||||||||||||||  |||||||||||||||||||||| || |  |||||| || ||    ||||||||||| |    
T  44611504 catactcatcttgaaggtcttgtttaaacgtgaggagtgcacgtctctccctctctttgcacttcgtgtttccattatttgttgccaagttgaacccaac 44611405  T
Q  227 aatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttc 276  Q
    |||| || ||||||||||||||||||  |||||| ||||| |||||||||    
T  44611404 aatggagaacaacaccaacaatgcatttaatgtattaatattatagtttc 44611355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 125 - 276
Target Start/End: Complemental strand, 44144664 - 44144513
Alignment:
Q  125 gccataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaaccca 224  Q
    |||||| |||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||  ||||  || ||  ||||||||||| |    
T  44144664 gccatagtcatcttgaacaccttgtttgaaagtgaggagtgcgtgtctctccctctctttgcactttgtgtctacattctttgttgctgagttgaaccta 44144565  T
Q  225 gcaatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttc 276  Q
     ||||| |||| ||||||||||||||||| |||| ||||||| |||||||||    
T  44144564 tcaatggaggataacaccaacaatgcatgtaatgcaataatattatagtttc 44144513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 44 - 224
Target Start/End: Complemental strand, 35898879 - 35898699
Alignment:
Q  44 ataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcgaacg 143  Q
    |||||| ||||| ||||||||||||| ||||||||||||||||||||| ||| ||||||  || |||||||  |||||||| || || || ||| ||| |    
T  35898879 ataaccagtttggttgttgcattgaactcctttccatttgcagcaatctgcatttggactatcattccatgtagacaacataccgtactcgtcttgaagg 35898780  T
Q  144 ccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaaccca 224  Q
    |||||||||||   |||||| || |||||||||||||||||||| || ||||| ||||||  ||||  |||||||||||||    
T  35898779 ccttgtttgaaaccgaggagagcatgtctctccctctctttgcagttggtatctccattatctattgctgagttgaaccca 35898699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 190
Target Start/End: Original strand, 11544994 - 11545143
Alignment:
Q  41 aacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcga 140  Q
    ||||||||| ||||| ||||||||  ||| |||||||||||| || ||||| |   || ||  ||  |||||||  ||||||||| |||| | ||||  |    
T  11544994 aacataacctgtttggttgttgcaacgaactcctttccatttacaacaatctgggttttgattgttgttccatgtcgacaacatgtcatacttatcttca 11545093  T
Q  141 acgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactt 190  Q
    | |  ||||||||| ||||||||||| ||||||||||||||| |||||||    
T  11545094 aggttttgtttgaatgtgaggagtgcatgtctctccctctctgtgcactt 11545143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 27 - 276
Target Start/End: Original strand, 30089 - 30338
Alignment:
Q  27 agatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgc 126  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||| ||||| | |||||||||| ||||||||| |    
T  30089 agatcaagcttttcaacataaccggtttgattgttgcattgaactcccttccatttgcagcaatctgcatttggatcctccttccatgtggacaacatac 30188  T
Q  127 cataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaacccagc 226  Q
    |||| |||||| ||| ||||||||| || |||| |||||  ||||||||||| |||||||||| ||| || |||||  || ||  ||||||||||||| |    
T  30189 catagtcatcttgaaggccttgtttcaaagtgacgagtgaatgtctctccctttctttgcactgtgtgtctccattctttgttgctgagttgaacccaac 30288  T
Q  227 aatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttc 276  Q
    |||| || ||||||| ||||||||||| ||||||  |||| |||||||||    
T  30289 aatggagaacaacactaacaatgcatgtaatgtagcaatattatagtttc 30338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 77 - 276
Target Start/End: Original strand, 29228864 - 29229063
Alignment:
Q  77 ccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctcc 176  Q
    ||||||||| ||||| |||||||||||||| ||||||| | |||||||| |||  ||||||  || ||||||||||||| |||| ||||| |||||||||    
T  29228864 ccatttgcaacaatctgcagttggaccgtctttccatgtgaacaacatgacattctcatctttaaggccttgtttgaacctgagcagtgcttgtctctcc 29228963  T
Q  177 ctctctttgcactttgtatcgccattaattatttttgagttgaacccagcaatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttc 276  Q
    |||||||||||||||||||| |||||| || ||  || |||||||||| ||||| |||||||||| ||||||||||| |||||| ||||| |||||||||    
T  29228964 ctctctttgcactttgtatctccattatttgttgctgtgttgaacccaacaatgcaggacaacactaacaatgcatgaaatgtagtaatattatagtttc 29229063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 77 - 276
Target Start/End: Original strand, 29342163 - 29342362
Alignment:
Q  77 ccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctcc 176  Q
    ||||||||| ||||| |||||||||||||| ||||||| | |||||||| |||  ||||||  || ||||||||||||| |||| ||||| |||||||||    
T  29342163 ccatttgcaacaatctgcagttggaccgtctttccatgtgaacaacatgacattctcatctttaaggccttgtttgaacctgagcagtgcttgtctctcc 29342262  T
Q  177 ctctctttgcactttgtatcgccattaattatttttgagttgaacccagcaatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttc 276  Q
    |||||||||||||||||||| |||||| || ||  || |||||||||| ||||| |||||||||| ||||||||||| |||||| ||||| |||||||||    
T  29342263 ctctctttgcactttgtatctccattatttgttgctgtgttgaacccaacaatgcaggacaacactaacaatgcatgaaatgtagtaatattatagtttc 29342362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 256
Target Start/End: Original strand, 29508253 - 29508482
Alignment:
Q  27 agatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgc 126  Q
    ||||||||  ||| ||||||||| ||||||||||||||| ||| ||| |||||||||||||||||  || ||||  |||||||||||| |||||||||||    
T  29508253 agatcaagtctttgaacataacctgtttgattgttgcatcgaactcccttccatttgcagcaatcttcatttgggtcgtccttccatgtggacaacatgc 29508352  T
Q  127 cataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaacccagc 226  Q
    |||| |||||| ||| ||||| ||||||  |||||||||| | ||||||| ||||||  |||||  | ||  ||||    |||   |||||||||||| |    
T  29508353 catactcatcttgaaggccttctttgaatttgaggagtgcatttctctccttctcttcacacttcatttcatcattctccattgcagagttgaacccaac 29508452  T
Q  227 aatgaaggacaacaccaacaatgcatggaa 256  Q
    ||||||| | ||||| ||||||||||||||    
T  29508453 aatgaagaataacacaaacaatgcatggaa 29508482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 20761969 - 20762047
Alignment:
Q  109 tccatgcggacaacatgccataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgca 187  Q
    |||||| ||| | |||||||||||||||| | | ||||||||||||| | | |||||| | ||||||||||||||||||    
T  20761969 tccatgtggaaagcatgccataatcatcttggaggccttgtttgaaccttaagagtgcttctctctccctctctttgca 20762047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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