View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6268_low_19 (Length: 293)

Name: NF6268_low_19
Description: NF6268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6268_low_19
NF6268_low_19
[»] chr4 (1 HSPs)
chr4 (1-285)||(29574001-29574300)


Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 29574300 - 29574001
Alignment:
Q  1 ctgtgtctaacacatgtgattttctcaagatttaccagtgtctgacatgtttcggtacttcataagttattaaattaaatgaaatta------------- 87  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||                 
T  29574300 ctgtgtctaacacatgtgattttctcaagatttaccagtgtcttacatgtgtcggtacttcataagttattaaattaaatgaaattatttttgtggttga 29574201  T
Q  88 --aacttataaattttatttctgtgtagcctgcaaagactgaaactgcaactgagaagcgtagcaaagttgagatattcaaggaacaaagcaatttcata 185  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29574200 aaaacttataaattttatttctgtgtagcctgcaaagactgaaactgcaactgagaagcgtagcaaagttgagatattcaaggaacaaagcaatttcata 29574101  T
Q  186 agatatcctcttaatgaagatatgttgaatgatgcacctaatttaagcgaagctgcaacacaattgattaagtttcatggtagttatcagcagtataatc 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29574100 agatatcctcttaatgaagatatgttgaatgatgcacctaatttaagcgaagctgcaacacaattgattaagtttcatggtagttatcagcagtataatc 29574001  T

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