View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6268_low_7 (Length: 476)
Name: NF6268_low_7
Description: NF6268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6268_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 4 - 436
Target Start/End: Original strand, 24255614 - 24256046
Alignment:
| Q |
4 |
ttctatattgaattttgctactctaacacagttcacacatccacttcnnnnnnnnnnnnnnnnnnngctttaatgcaccttcaccatactcatgcatcca |
103 |
Q |
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| T |
24255614 |
ttctatattgaattttgctactctaacacagttcacacatccacttcttttttattattattttttgctttaatgcaccttcaccatactcatgcatcca |
24255713 |
T |
|
| Q |
104 |
aattggaaaaacgnnnnnnnnctcttctattgaatcatttttcttgaattaaaatatttggatgagaagaaaaagacccaagtttttgaagtctaaacac |
203 |
Q |
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| T |
24255714 |
aattggaaaaacgttttctttctcttctattgaatcatttttcttgaattaaaatatttggatgagaagaaaaagacccaggtttttgaagtctaaacac |
24255813 |
T |
|
| Q |
204 |
actaattgttacccgannnnnnncattcacaatagttcctatgttatgccatctacatagttgacccataagcctttaacattcctgtaaattaccccta |
303 |
Q |
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| T |
24255814 |
aataattgttacccgatttttttcattcacaatagttcctatgatatgccatctacataggtgacccataagccattaacattcctgtaaattaccccta |
24255913 |
T |
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| Q |
304 |
atttaagaaggggtaatgtaaacctcaccttaaaatgatcatcgtattgcgattttcgatgatatttttgcttatcaaaagtttcaaataataaaatgac |
403 |
Q |
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|||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24255914 |
atttaagaaggggtaatgtagacctcactctaaaatgatcatcgtattgcaattttcgatgatatttttgcttatcaaaagtttcaaatagtaaaatgac |
24256013 |
T |
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| Q |
404 |
cgatttttatcatttcaagaatcagttttgtag |
436 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
24256014 |
cgatttttatcatttcaagaatcagttttgtag |
24256046 |
T |
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