View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6268_low_8 (Length: 476)
Name: NF6268_low_8
Description: NF6268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6268_low_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 17 - 476
Target Start/End: Original strand, 28023001 - 28023460
Alignment:
| Q |
17 |
tcatgcatattatatcaacgaggcttctgaaattcaactttctgttgacattcaacctagatgattacatgccttccatggtgatggtatggtttgaata |
116 |
Q |
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| T |
28023001 |
tcatgcatattatatcaacgaggcttctgaaattcaactttctgttgacattcaacctagatgattacatgccttccatggtgatggtatggtttgaata |
28023100 |
T |
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| Q |
117 |
agattttaatagaattttatatagcagatatagttagtatcaagctttgtaatgcacaagttagatttcgttatgaagtctgaaaacaattattcgcgaa |
216 |
Q |
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| T |
28023101 |
agattttaatagaattctatatagcagatatagttagtatcaagctttgtaatgcacaagttagatttcgttatgaagtctgaaaacaattattcgcgaa |
28023200 |
T |
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| Q |
217 |
nnnnnnncaaatgaatgaaatctatannnnnnnnatgaaactaaatcaaatgcagatatacatacaaatattacaatgaccacatttaacataagcacca |
316 |
Q |
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| T |
28023201 |
tttttttcaaatgaatgaaatctatattttttttatgaaactaaatcaaatgcagatatacatacaaatattacaatgaccacatttaacataagcacca |
28023300 |
T |
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| Q |
317 |
tgagggaatgtgaaaatcaataaaataatacaaaatccacattgtacatatataaataccatttatttgatgtttattttcggaataaatgtcattgaat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28023301 |
tgagggaatgtgaaaatcaataaaataatacaaaatccacattgtacatatataaataccatttatttgatgtttattttcggaataaatgtcattgaat |
28023400 |
T |
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| Q |
417 |
cattttttactatagatgttctcatttgtatataactctcgcctgtttaatacttcgatc |
476 |
Q |
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| T |
28023401 |
cattttttactatagatgttctcatttgtatataaccctcgcctgtttaatacttcgatc |
28023460 |
T |
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