View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6269_high_1 (Length: 289)

Name: NF6269_high_1
Description: NF6269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6269_high_1
NF6269_high_1
[»] chr4 (8 HSPs)
chr4 (1-264)||(44527161-44527420)
chr4 (3-195)||(7103562-7103755)
chr4 (10-195)||(11423063-11423248)
chr4 (3-195)||(40756694-40756887)
chr4 (48-197)||(9745688-9745836)
chr4 (67-195)||(9742163-9742292)
chr4 (113-187)||(7108985-7109060)
chr4 (104-197)||(9747854-9747948)
[»] chr7 (6 HSPs)
chr7 (3-195)||(11790843-11791036)
chr7 (3-197)||(25616662-25616857)
chr7 (3-195)||(14069237-14069430)
chr7 (3-195)||(14379265-14379458)
chr7 (10-93)||(5043487-5043568)
chr7 (3-101)||(9112230-9112328)
[»] chr5 (4 HSPs)
chr5 (3-195)||(27214331-27214524)
chr5 (3-192)||(16054845-16055035)
chr5 (69-194)||(43462443-43462569)
chr5 (120-195)||(32401971-32402046)
[»] chr8 (6 HSPs)
chr8 (3-195)||(16436010-16436206)
chr8 (3-195)||(9492870-9493063)
chr8 (48-209)||(19237366-19237528)
chr8 (48-209)||(19310550-19310712)
chr8 (104-195)||(8969950-8970042)
chr8 (160-197)||(2538083-2538120)
[»] chr2 (3 HSPs)
chr2 (3-192)||(17538592-17538782)
chr2 (3-195)||(26024419-26024615)
chr2 (67-197)||(5953593-5953723)
[»] chr3 (3 HSPs)
chr3 (3-197)||(9491175-9491370)
chr3 (71-195)||(19625136-19625261)
chr3 (128-194)||(1661683-1661749)
[»] chr1 (1 HSPs)
chr1 (66-168)||(43541479-43541582)
[»] scaffold0524 (2 HSPs)
scaffold0524 (123-192)||(10103-10173)
scaffold0524 (3-94)||(10246-10335)
[»] chr6 (1 HSPs)
chr6 (144-194)||(30270412-30270462)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 44527161 - 44527420
Alignment:
Q  1 ataaataagaaatattttgagggaactaatgttgatgtgaatgtcattgttcaaaagacacgaggatctattgtgaattttaaaagtgctagtacattgt 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44527161 ataaataagaaatattttgagggaattaatgttgatgtgaatgtcattgttcaaaagacacaaggatctattgtgaattttaaaagtgctagtacattgt 44527260  T
Q  101 ttttggagacactaagttgaggtccaatttgccaatgtatgatgttcattgaatacctccttttagtggtttctataagcttaatgttgatgcagtatat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |    
T  44527261 ttttggagacactaagttgaggtccaatttgccaatgtatgatgttcattgaatatctccttttagtggtttctataagcttaatgttgatgtagtatgt 44527360  T
Q  201 ccgttagagccttagaggagagtaagtggggtattgttgacgtgggaagagataatgatgatgt 264  Q
    |||||||||||||||||||||||||    |||||||||| |||||||||||||||||| |||||    
T  44527361 ccgttagagccttagaggagagtaa----ggtattgttgtcgtgggaagagataatgaagatgt 44527420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 3 - 195
Target Start/End: Original strand, 7103562 - 7103755
Alignment:
Q  3 aaataagaaatattttgagggaactaatgttgatgtgaatgtcattgttcaaaagacacgaggatctattgtgaattttaaaagtgctagtacattgttt 102  Q
    ||||||||||| ||||||||| | | |||||||| ||  || |||| |||||||| ||| | ||||||||| ||||||||| |||||||||||  ||||     
T  7103562 aaataagaaatgttttgaggggattgatgttgatttggctgccattattcaaaaggcacaacgatctattgggaattttaagagtgctagtacgatgttg 7103661  T
Q  103 ttggagacactaagttgaggtccaa-tttgccaatgtatgatgttcattgaatacctccttttagtggtttctataagcttaatgttgatgcag 195  Q
     |||| ||||||||| ||||||||| ||||||||| | |||||||||||| | |||||||||||||||||||||||||||||||||||| ||||    
T  7103662 gtggatacactaagtggaggtccaattttgccaatttctgatgttcattggacacctccttttagtggtttctataagcttaatgttgacgcag 7103755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 10 - 195
Target Start/End: Complemental strand, 11423248 - 11423063
Alignment:
Q  10 aaatattttgagggaactaatgttgatgtgaatgtcattgttcaaaagacacgaggatctattgtgaattttaaaagtgctagtacattgtttttggaga 109  Q
    |||| ||||||||| ||| |||||||||||| ||||||| | |||||| ||| | ||||||||||||||||||| ||||||| |||  |||| ||||||     
T  11423248 aaatgttttgaggggactgatgttgatgtgactgtcattttccaaaaggcacaaagatctattgtgaattttaagagtgctaatacggtgttgttggagg 11423149  T
Q  110 cactaagttgaggtccaattt-gccaatgtatgatgttcattgaatacctccttttagtggtttctataagcttaatgttgatgcag 195  Q
    |||||||| ||| |||||||| |||||| | | |||||||||| | |||||||||||||||||||||||| ||||||||||||||||    
T  11423148 cactaagtagag-tccaattttgccaatatttaatgttcattggacacctccttttagtggtttctataatcttaatgttgatgcag 11423063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 3 - 195
Target Start/End: Complemental strand, 40756887 - 40756694
Alignment:
Q  3 aaataagaaatattttgagggaactaatgttgatgtgaatgtcattgttcaaaagacacgaggatctattgtgaattttaaaagtgctagtacattgttt 102  Q
    ||||||||||| ||||||||| ||| |||||||||||  || || | |||||||| ||| | ||||||||| || |||||| |||||||||||  ||||     
T  40756887 aaataagaaatgttttgaggggactgatgttgatgtggctgccactattcaaaaggcacaaagatctattgggagttttaagagtgctagtacggtgttg 40756788  T
Q  103 ttggagacactaagttgaggtccaattt-gccaatgtatgatgttcattgaatacctccttttagtggtttctataagcttaatgttgatgcag 195  Q
     ||||||||||||||  |||||| |||| |||||| | | |||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  40756787 gtggagacactaagtgaaggtccgattttgccaatatcttatgttcattgaacacctccttttagtggtttctacaagcttaatgttgatgcag 40756694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 197
Target Start/End: Complemental strand, 9745836 - 9745688
Alignment:
Q  48 tgttcaaaagacacgaggatctattgtgaattttaaaagtgctagtacattgtttttggagacactaagttgaggtccaatttgc-caatgtatgatgtt 146  Q
    |||||||||| ||| | | ||||||||||||||||| ||| |  |||||  | |  |||||||||||||| || |||||||||   |||| |||||||||    
T  9745836 tgttcaaaaggcacaaagttctattgtgaattttaatagtac--gtacaacgatgatggagacactaagtggatgtccaattttttcaatatatgatgtt 9745739  T
Q  147 cattgaatacctccttttagtggtttctataagcttaatgttgatgcagta 197  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  9745738 cattgaacacctccttttagtagtttctataagcttaatgttgatgcagta 9745688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 195
Target Start/End: Complemental strand, 9742292 - 9742163
Alignment:
Q  67 tctattgtgaattttaaaagtgctagtacattgtttttggagacactaagttgaggtccaattt-gccaatgtatgatgttcattgaatacctcctttta 165  Q
    ||||||||||||||||| ||||||||||||    |  | |||||||||||| |||||||||||| | |||| | |||||||||||  | |||||||||||    
T  9742292 tctattgtgaattttaagagtgctagtacaaccatgatagagacactaagtggaggtccaattttgtcaatatctgatgttcatttgacacctcctttta 9742193  T
Q  166 gtggtttctataagcttaatgttgatgcag 195  Q
    | ||||||||||||||||||||||||||||    
T  9742192 gaggtttctataagcttaatgttgatgcag 9742163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 7108985 - 7109060
Alignment:
Q  113 taagttgaggtccaattt-gccaatgtatgatgttcattgaatacctccttttagtggtttctataagcttaatgt 187  Q
    ||||| |||||||||||| |||||| | |||||||||||| | |||||||||||||||||||||||||||||||||    
T  7108985 taagtggaggtccaattttgccaatatctgatgttcattggacacctccttttagtggtttctataagcttaatgt 7109060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 197
Target Start/End: Complemental strand, 9747948 - 9747854
Alignment:
Q  104 tggagacactaagttgaggtccaatttgc-caatgtatgatgttcattgaatacctccttttagtggtttctataagcttaatgttgatgcagta 197  Q
    ||||||| |||||| ||||| ||||||   |||| | |||||||||||| | ||||||||| |||||||||| ||||||||||||||||||||||    
T  9747948 tggagactctaagtggaggtacaattttttcaatatctgatgttcattggacacctcctttaagtggtttctgtaagcttaatgttgatgcagta 9747854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 3 - 195
Target Start/End: Complemental strand, 11791036 - 11790843
Alignment:
Q  3 aaataagaaatattttgagggaactaatgttgatgtgaatgtcattgttcaaaagacacgaggatctattgtgaattttaaaagtgctagtacattgttt 102  Q
    |||||||||||  |||||||| || ||||||||||||  || || |||||||||| ||| | ||||||||||||||||||| |||||||||||  ||||     
T  11791036 aaataagaaatgctttgaggggacaaatgttgatgtggctgccactgttcaaaaggcacaaagatctattgtgaattttaagagtgctagtacggtgttg 11790937  T
Q  103 ttggagacactaagttgaggtccaa-tttgccaatgtatgatgttcattgaatacctccttttagtggtttctataagcttaatgttgatgcag 195  Q
     |||||||||||||| ||||||||| ||||||||| | |||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  11790936 gtggagacactaagtggaggtccaattttgccaatatctgatgttcattggacacctccttttagtggtttctataagcttaatgttgatgcag 11790843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 3 - 197
Target Start/End: Complemental strand, 25616857 - 25616662
Alignment:
Q  3 aaataagaaatattttgagggaactaatgttgatgtgaatgtcattgttcaaaagacacgaggatctattgtgaattttaaaagtgctagtacattgttt 102  Q
    ||||||||||  ||||||||| | | |||||||||||| ||||| |||||||||| ||| | |||||||||| |||||||| |||||| |||   ||||     
T  25616857 aaataagaaacgttttgaggggattgatgttgatgtgactgtcactgttcaaaaggcacaaagatctattgtcaattttaagagtgctggtatggtgttg 25616758  T
Q  103 ttggagacactaagttgaggtccaa-tttgccaatgtatgatgttcattgaatacctccttttagtggtttctataagcttaatgttgatgcagta 197  Q
     |||||||||||||| ||||| ||| ||||||||| | |||||| ||||| | ||||||||||||||||||||||||||||||||||||| |||||    
T  25616757 gtggagacactaagtggaggttcaattttgccaatatctgatgtacattggacacctccttttagtggtttctataagcttaatgttgatacagta 25616662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 3 - 195
Target Start/End: Complemental strand, 14069430 - 14069237
Alignment:
Q  3 aaataagaaatattttgagggaactaatgttgatgtgaatgtcattgttcaaaagacacgaggatctattgtgaattttaaaagtgctagtacattgttt 102  Q
    ||||||||||| |||||||   ||| |||||||||||  |  ||||||||||||| ||  |  |||||||||||||||||| ||||| |||||  ||||     
T  14069430 aaataagaaatgttttgagttgactgatgttgatgtggctaccattgttcaaaaggcataaaaatctattgtgaattttaagagtgcaagtacggtgttg 14069331  T
Q  103 ttggagacactaagttgaggtccaattt-gccaatgtatgatgttcattgaatacctccttttagtggtttctataagcttaatgttgatgcag 195  Q
     |||||||||||||| |||||||||||| |||||| | |||||||||||| | ||||||||||||||||| |||||||||||||||||||||||    
T  14069330 atggagacactaagtggaggtccaattttgccaatatctgatgttcattggacacctccttttagtggttcctataagcttaatgttgatgcag 14069237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 3 - 195
Target Start/End: Complemental strand, 14379458 - 14379265
Alignment:
Q  3 aaataagaaatattttgagggaactaatgttgatgtgaatgtcattgttcaaaagacacgaggatctattgtgaattttaaaagtgctagtacattgttt 102  Q
    ||||||||||| |||||||   ||| |||||||||||  |  ||||||||||||| ||  |  |||||||||||||||||| ||||| |||||  ||||     
T  14379458 aaataagaaatgttttgagttgactgatgttgatgtggctaccattgttcaaaaggcataaaaatctattgtgaattttaagagtgcaagtacggtgttg 14379359  T
Q  103 ttggagacactaagttgaggtccaattt-gccaatgtatgatgttcattgaatacctccttttagtggtttctataagcttaatgttgatgcag 195  Q
     |||||||||||||| |||||||||||| |||||| | |||||||||||| | ||||||||||||||||| |||||||||||||||||||||||    
T  14379358 atggagacactaagtggaggtccaattttgccaatatctgatgttcattggacacctccttttagtggttcctataagcttaatgttgatgcag 14379265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 5043568 - 5043487
Alignment:
Q  10 aaatattttgagggaactaatgttgatgtgaatgtcattgttcaaaagacacgaggatctattgtgaattttaaaagtgctagt 93  Q
    |||||||||||||| ||| | |||||||||| |||||||||||||||||||| |  ||||||||| |||||||| |||||||||    
T  5043568 aaatattttgaggggactgacgttgatgtga-tgtcattgttcaaaagacacaaaaatctattgt-aattttaagagtgctagt 5043487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 9112328 - 9112230
Alignment:
Q  3 aaataagaaatattttgagggaactaatgttgatgtgaatgtcattgttcaaaagacacgaggatctattgtgaattttaaaagtgctagtacattgtt 101  Q
    |||||| |||||||||||||| ||| | |||||||||  || ||  || |||||| ||| | |||| ||||| |||||||| |||||||||||| ||||    
T  9112328 aaataaaaaatattttgaggggactgaagttgatgtggttgccacggtacaaaaggcacaaagatccattgttaattttaatagtgctagtacaatgtt 9112230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 3 - 195
Target Start/End: Complemental strand, 27214524 - 27214331
Alignment:
Q  3 aaataagaaatattttgagggaactaatgttgatgtgaatgtcattgttcaaaagacacgaggatctattgtgaattttaaaagtgctagtacattgttt 102  Q
    ||||||||||||||||||||| ||| |||||||||||| || ||||||||||||  ||| | ||||||||||||||||||| ||||| | |||| ||||     
T  27214524 aaataagaaatattttgaggggactgatgttgatgtgactgccattgttcaaaaagcacaaagatctattgtgaattttaagagtgcgaatacagtgttg 27214425  T
Q  103 ttggagacactaagttgaggtccaattt-gccaatgtatgatgttcattgaatacctccttttagtggtttctataagcttaatgttgatgcag 195  Q
    |||||| |||||||| |||||||||||| ||   | | |||||||||||| | ||||||||||||||| |||||||||||||||||||||||||    
T  27214424 ttggaggcactaagtggaggtccaattttgcgggtatctgatgttcattgtacacctccttttagtggcttctataagcttaatgttgatgcag 27214331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 16054845 - 16055035
Alignment:
Q  3 aaataagaaatattttgagggaactaatgttgatgtgaatgtcattgttcaaaagacacgaggatctattgtgaattttaaaagtgctagtacattgttt 102  Q
    ||||||||||| |||||||||  || |||||||||||  ||  | |||||||||||||| | |||||| ||||||||||| ||||||||||||  ||||     
T  16054845 aaataagaaatgttttgagggggctgatgttgatgtggctgcaactgttcaaaagacacaaagatctaatgtgaattttagaagtgctagtacggtgttg 16054944  T
Q  103 ttggagacactaagttgaggtccaat-ttgccaatgtatgatgttcattgaatacctccttttagtggtttctataagcttaatgttgatg 192  Q
    ||||||||||||||  |||||||| | |||||| | |   |||||||||  | |||||  |||| || ||||||||||||| |||||||||    
T  16054945 ttggagacactaagcggaggtccagtcttgccactatcatatgttcatttgacacctctatttaatgttttctataagcttgatgttgatg 16055035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 194
Target Start/End: Original strand, 43462443 - 43462569
Alignment:
Q  69 tattgtgaattttaaaagtgctagtacattgtttttggagacactaagttgaggtccaa-tttgccaatgtatgatgttcattgaatacctccttttagt 167  Q
    ||||||||||||||| |||| || ||  ||||| || ||||| |||||| ||||||||| |||| |||| | |||||||||||  | ||||||||||||     
T  43462443 tattgtgaattttaagagtgatattatgttgttgttcgagacgctaagtagaggtccaattttgtcaatatttgatgttcatttgacacctccttttaga 43462542  T
Q  168 ggtttctataagcttaatgttgatgca 194  Q
      ||| ||||| |||||||||||||||    
T  43462543 attttttataaacttaatgttgatgca 43462569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 32402046 - 32401971
Alignment:
Q  120 aggtccaattt-gccaatgtatgatgttcattgaatacctccttttagtggtttctataagcttaatgttgatgcag 195  Q
    ||||||||||| | |||| ||||||||||||||   ||||||||||||| |||||||||||||||||||||| ||||    
T  32402046 aggtccaatttcgtcaatatatgatgttcattggc-acctccttttagtagtttctataagcttaatgttgacgcag 32401971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 3 - 195
Target Start/End: Complemental strand, 16436206 - 16436010
Alignment:
Q  3 aaataagaaatattttgagggaactaatgttgatgtgaatgtcattgttcaaaagacacgaggatctattgtgaat---tttaaaagtgctagtacattg 99  Q
    ||||||||||| ||||||||| ||| |||||||||||  || || ||||||||||||||   |||||||| |||||   ||||| |||| ||||||  ||    
T  16436206 aaataagaaatgttttgaggggactgatgttgatgtggctgccactgttcaaaagacacagagatctattatgaataattttaagagtgttagtacggtg 16436107  T
Q  100 tttttggagacactaagttgaggtccaattt-gccaatgtatgatgttcattgaatacctccttttagtggtttctataagcttaatgttgatgcag 195  Q
    ||  |||||||||| ||| |||||||||||| |||||| | |||||||||||  |||||||||||||||||||||||||||||||||| ||||||||    
T  16436106 ttggtggagacactgagtggaggtccaattttgccaatatttgatgttcattagatacctccttttagtggtttctataagcttaatgctgatgcag 16436010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 195
Target Start/End: Complemental strand, 9493063 - 9492870
Alignment:
Q  3 aaataagaaatattttgagggaactaatgttgatgtgaatgtcattgttcaaaagacacgaggatctattgtgaattttaaaagtgctagtacattgttt 102  Q
    ||||||||||| ||||||||| | | |||||||||||  || || | |||||||| ||| | |||||||||| |||||||| |||||| ||||| ||||     
T  9493063 aaataagaaatgttttgaggggattgatgttgatgtggctgccactattcaaaaggcacaaagatctattgtaaattttaagagtgctggtacaatgttg 9492964  T
Q  103 ttggagacactaagttgaggtccaa-tttgccaatgtatgatgttcattgaatacctccttttagtggtttctataagcttaatgttgatgcag 195  Q
     ||||||| |||||| ||||||||| ||||||||| | ||| |||||||| | ||||||||||||||||||||||||||| ||| |||||||||    
T  9492963 gtggagacgctaagtagaggtccaattttgccaatatctgacgttcattggacacctccttttagtggtttctataagctaaatattgatgcag 9492870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 48 - 209
Target Start/End: Original strand, 19237366 - 19237528
Alignment:
Q  48 tgttcaaaagacacgaggatctattgtgaattttaaaagtgctagtacattgtttttggagacactaagttgaggtccaattt-gccaatgtatgatgtt 146  Q
    |||||||||| ||| | |||||||||  |||||||| |||||||||||  ||||  |||||||| ||||| ||||| |||||| |||||| | |||||||    
T  19237366 tgttcaaaaggcacaaagatctattggaaattttaagagtgctagtacggtgttggtggagacagtaagtggaggttcaattttgccaatatctgatgtt 19237465  T
Q  147 cattgaatacctccttttagtggtttctataagcttaatgttgatgcagtatatccgttagag 209  Q
    ||||| | |||||||||||||||||| ||||||||||| |||||||||  ||||||| |||||    
T  19237466 cattggacacctccttttagtggtttttataagcttaacgttgatgcaacatatccgatagag 19237528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 48 - 209
Target Start/End: Original strand, 19310550 - 19310712
Alignment:
Q  48 tgttcaaaagacacgaggatctattgtgaattttaaaagtgctagtacattgtttttggagacactaagttgaggtccaattt-gccaatgtatgatgtt 146  Q
    |||||||||| ||| | |||||||||  |||||||| |||||||||||  ||||  |||||||| ||||| ||||| |||||| |||||| | |||||||    
T  19310550 tgttcaaaaggcacaaagatctattggaaattttaagagtgctagtacggtgttggtggagacagtaagtggaggttcaattttgccaatatctgatgtt 19310649  T
Q  147 cattgaatacctccttttagtggtttctataagcttaatgttgatgcagtatatccgttagag 209  Q
    ||||| | |||||||||||||||||| ||||||||||| |||||||||  ||||||| |||||    
T  19310650 cattggacacctccttttagtggtttttataagcttaacgttgatgcaacatatccgatagag 19310712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 195
Target Start/End: Original strand, 8969950 - 8970042
Alignment:
Q  104 tggagacactaagttgaggtccaattt-gccaatgtatgatgttcattgaatacctccttttagtggtttctataagcttaatgttgatgcag 195  Q
    ||||||||| |||| || ||||||||| | |||| | |||||||||||| | ||||| |||||||||||| |||||| |||||||||||||||    
T  8969950 tggagacacaaagtggaagtccaattttgtcaatatgtgatgttcattggacacctctttttagtggtttttataagtttaatgttgatgcag 8970042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 2538120 - 2538083
Alignment:
Q  160 cttttagtggtttctataagcttaatgttgatgcagta 197  Q
    |||||||||||||||| || ||||||||||||||||||    
T  2538120 cttttagtggtttctacaaacttaatgttgatgcagta 2538083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 3 - 192
Target Start/End: Original strand, 17538592 - 17538782
Alignment:
Q  3 aaataagaaatattttgagggaactaatgttgatgtgaatgtcattgttcaaaagacacgaggatctattgtgaattttaaaagtgctagtacattgttt 102  Q
    |||||| |||| ||||||||||||| ||||||||||| ||| || ||||||||||  || | |||||||||||||||| || |||| ||||||  ||||     
T  17538592 aaataataaatgttttgagggaactgatgttgatgtggatgacactgttcaaaaggtacaaagatctattgtgaatttcaagagtgttagtacggtgttg 17538691  T
Q  103 ttggagacactaagttgaggtccaa-tttgccaatgtatgatgttcattgaatacctccttttagtggtttctataagcttaatgttgatg 192  Q
     |||||||||||||| |||||| || ||||  ||| | |||||||||||  | ||||||||||||||||||||||||||||||||||||||    
T  17538692 gtggagacactaagtggaggtcaaattttgttaatatctgatgttcatttgacacctccttttagtggtttctataagcttaatgttgatg 17538782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 3 - 195
Target Start/End: Original strand, 26024419 - 26024615
Alignment:
Q  3 aaataagaaatattttgagggaactaatgttgatgtgaatgtcattgttcaaaagacacgaggatctattgtgaattttaaaagtgctagtacattgttt 102  Q
    ||||||||||| |||||||||  || |||||||||||| |   | |||||||||| ||| | |||||||| |||||||||| ||||  |||||  ||||     
T  26024419 aaataagaaatgttttgagggggctgatgttgatgtgactacaactgttcaaaaggcacaaagatctattatgaattttaagagtgtaagtacggtgttg 26024518  T
Q  103 ttggagacactaagttgaggtccaattt-gccaatgtatgatgttcattgaatacctcct---tttagtggtttctataagcttaatgttgatgcag 195  Q
     |||| ||||||||| |||||||| ||| |||||| | | |||||||||| | |||||||   ||||||||||||||||||||| ||||||||||||    
T  26024519 atggaaacactaagtggaggtccagttttgccaatatctaatgttcattggacacctcctccatttagtggtttctataagcttgatgttgatgcag 26024615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 67 - 197
Target Start/End: Complemental strand, 5953723 - 5953593
Alignment:
Q  67 tctattgtgaattttaaaagtgctagtacattgtttttggagacactaagttgaggtccaatttg-ccaatgtatgatgttcattgaatacctcctttta 165  Q
    |||||||||||||||||||||  ||||||  |||| |||||| |||||||| ||||||||||||  ||||| | ||||||||||   | |||||||||||    
T  5953723 tctattgtgaattttaaaagtattagtacggtgttgttggag-cactaagtggaggtccaattttaccaatatttgatgttcatatgacacctcctttta 5953625  T
Q  166 gtggtttctataagcttaatgttgatgcagta 197  Q
    ||||||| |||||||| |||||||| ||||||    
T  5953624 gtggtttttataagctcaatgttgacgcagta 5953593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 3 - 197
Target Start/End: Complemental strand, 9491370 - 9491175
Alignment:
Q  3 aaataagaaatattttgagggaactaatgttgatgtgaatgtcattgttcaaaagacacgaggatctattgtgaattttaaaagtgctagtacattgttt 102  Q
    ||||||||||| ||||||||||||| |||||||||||  || || |||||||||| ||  | |||| |||||||||||||| ||||||||||   ||||     
T  9491370 aaataagaaatgttttgagggaactgatgttgatgtggctgccactgttcaaaaggcaaaaagatcaattgtgaattttaagagtgctagtatggtgttg 9491271  T
Q  103 ttggagacactaagttgaggtccaa-tttgccaatgtatgatgttcattgaatacctccttttagtggtttctataagcttaatgttgatgcagta 197  Q
     |||||||||||||| ||||||||| ||||||||  | | |||||||||| | |||  |||||| ||||||||||||| |||||||||||||||||    
T  9491270 gtggagacactaagtggaggtccaattttgccaacatcttatgttcattggacaccatcttttaatggtttctataagtttaatgttgatgcagta 9491175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 195
Target Start/End: Complemental strand, 19625261 - 19625136
Alignment:
Q  71 ttgtgaattttaaaagtgctagtacattgtttttggagacactaagttgaggtccaa-tttgccaatgtatgatgttcattgaatacctccttttagtgg 169  Q
    |||||||||| || ||||  | |||| |||| ||||||||||||||| |||||| || ||||||||| | |||||||||||| | ||||| |||||||||    
T  19625261 ttgtgaatttcaagagtgtcaatacaatgttgttggagacactaagtggaggtctaagtttgccaatatctgatgttcattggacacctctttttagtgg 19625162  T
Q  170 tttctataagcttaatgttgatgcag 195  Q
    ||||| ||| |||||||| |||||||    
T  19625161 tttctgtaaacttaatgtcgatgcag 19625136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 1661749 - 1661683
Alignment:
Q  128 tttgccaatgtatgatgttcattgaatacctccttttagtggtttctataagcttaatgttgatgca 194  Q
    ||||||||| |||||||||||||| | |  | ||||||||| |||||||||||||||||||||||||    
T  1661749 tttgccaatatatgatgttcattggacatattcttttagtgatttctataagcttaatgttgatgca 1661683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 168
Target Start/End: Original strand, 43541479 - 43541582
Alignment:
Q  66 atctattgtgaattttaaaagtgctagtacattgtttttggagacactaagttgaggtccaattt-gccaatgtatgatgttcattgaatacctcctttt 164  Q
    |||||||||||||||||| ||  | |||||  ||||  |||||||||||||| ||||||| |||| |||||| | |||||| ||||||| ||||||||||    
T  43541479 atctattgtgaattttaagaggtcaagtacggtgttgatggagacactaagtggaggtcccattttgccaatatctgatgtccattgaacacctcctttt 43541578  T
Q  165 agtg 168  Q
    ||||    
T  43541579 agtg 43541582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 10173 - 10103
Alignment:
Q  123 tccaattt-gccaatgtatgatgttcattgaatacctccttttagtggtttctataagcttaatgttgatg 192  Q
    |||||||| |||||| | |||||||||||  | ||||| |||||||||||| |||||||||||||||||||    
T  10173 tccaatttagccaatatctgatgttcatttgacacctctttttagtggtttttataagcttaatgttgatg 10103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 10335 - 10246
Alignment:
Q  3 aaataagaaatattttgagggaactaatgttgatgtgaatgtcattgttcaaaagacacgaggatctattgtgaattttaaaagtgctagta 94  Q
    ||||||||||| ||||||||| ||| ||||||||||   ||  | |||||||||||||| |  |||||||||||||||||| |||| |||||    
T  10335 aaataagaaatgttttgaggggactgatgttgatgtcgttggtactgttcaaaagacacaa--atctattgtgaattttaagagtgttagta 10246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 30270412 - 30270462
Alignment:
Q  144 gttcattgaatacctccttttagtggtttctataagcttaatgttgatgca 194  Q
    |||||||| | ||| | |||||||||||||||||||||||||||| |||||    
T  30270412 gttcattggacaccccattttagtggtttctataagcttaatgtttatgca 30270462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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