View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6270_high_2 (Length: 385)

Name: NF6270_high_2
Description: NF6270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6270_high_2
NF6270_high_2
[»] chr4 (7 HSPs)
chr4 (8-343)||(40634338-40634673)
chr4 (8-343)||(40645945-40646273)
chr4 (341-381)||(16003579-16003619)
chr4 (339-382)||(15039906-15039949)
chr4 (339-382)||(15041635-15041678)
chr4 (339-382)||(15112746-15112789)
chr4 (339-382)||(15114475-15114518)
[»] chr5 (2 HSPs)
chr5 (56-190)||(4781083-4781217)
chr5 (256-343)||(4781499-4781586)
[»] chr8 (3 HSPs)
chr8 (28-98)||(31134395-31134465)
chr8 (339-382)||(30187753-30187796)
chr8 (340-381)||(22692478-22692519)
[»] chr7 (3 HSPs)
chr7 (339-382)||(10866346-10866389)
chr7 (341-385)||(10868060-10868104)
chr7 (339-382)||(20186185-20186228)
[»] chr6 (2 HSPs)
chr6 (347-385)||(34244806-34244844)
chr6 (340-381)||(30579989-30580030)
[»] chr1 (1 HSPs)
chr1 (341-382)||(17309792-17309833)


Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 8 - 343
Target Start/End: Complemental strand, 40634673 - 40634338
Alignment:
Q  8 attatacttagcatgattttgaatgaatcaaaacaagattggtagcttaccaatgtttcatctgtggattttgaatccaaaacagccttataacctttgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40634673 attatacttagcatgattttgaatgaatcaaaacaagattggtagcttaccaatgtttcatctgtggattttgaatccaaaacagccttataacctttgt 40634574  T
Q  108 atattggaccttcagatgattttatatcaccagaaacttcaatttctccataaaaatattcattgacacaagctgcaatatttcacaccatacaataaat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40634573 atattggaccttcagatgattttatatcaccagaaacttcaatttctccataaaaatattcattgacacaagctgcaatatttcacaccatacaataaat 40634474  T
Q  208 tgttaatatgcaaagtaataaaacctttgatactatgcatgtgttatgaatttggcataccttctatagatttggcaaggccttcaagtttgaaagctgt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40634473 tgttaatatgcaaagtaataaaacctttgatactatgcatgtgttatgaatttggcataccttctatagatttggcaaggccttcaagtttgaaagctgt 40634374  T
Q  308 ggaatgatgaaggtcttcccctgaccaatttggaaa 343  Q
    ||||||||||||||||||||||||||||||||||||    
T  40634373 ggaatgatgaaggtcttcccctgaccaatttggaaa 40634338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 8 - 343
Target Start/End: Complemental strand, 40646273 - 40645945
Alignment:
Q  8 attatacttagcatgattttgaatgaatcaaaacaagattggtagcttaccaatgtttcatctgtggattttgaatccaaaacagccttataacctttgt 107  Q
    |||||||| |||||| ||| |||||||||||||||||||   |||||||||||||||||||| |||||||||||||||||||| || |||||||||||||    
T  40646273 attatactcagcatgttttagaatgaatcaaaacaagatgaatagcttaccaatgtttcatcagtggattttgaatccaaaactgctttataacctttgt 40646174  T
Q  108 atattggaccttcagatgattttatatcaccagaaacttcaatttctccataaaaatattcattgacacaagctgcaatatttcacaccatacaataaat 207  Q
    |||||| | | ||| |||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||  | |||||||| |||||||||     
T  40646173 atattgaatcatcacatgattttatatcaccagaaacttcaatttctccattaaaatattcaccgacacaagctgcacgaattcacaccgtacaataaaa 40646074  T
Q  208 tgttaatatgcaaagtaataaaacctttgatactatgcatgtgttatgaatttggcataccttctatagatttggcaaggccttcaagtttgaaagctgt 307  Q
    |||||  || |||||    |||||||||||||||    ||||||| | || ||  ||||||||||||||||||||| |||||||||||||||||||||||    
T  40646073 tgttatcatacaaag---caaaacctttgatact----atgtgttgtaaactttacataccttctatagatttggctaggccttcaagtttgaaagctgt 40645981  T
Q  308 ggaatgatgaaggtcttcccctgaccaatttggaaa 343  Q
    ||||||| | || |||||||| ||||||||||||||    
T  40645980 ggaatgacgtagatcttccccggaccaatttggaaa 40645945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 16003619 - 16003579
Alignment:
Q  341 aaaacccttagaattcattataaattgtattgaaaaagatt 381  Q
    ||||| ||||||||||||||||||||||||| |||||||||    
T  16003619 aaaactcttagaattcattataaattgtatttaaaaagatt 16003579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 382
Target Start/End: Original strand, 15039906 - 15039949
Alignment:
Q  339 ggaaaacccttagaattcattataaattgtattgaaaaagatta 382  Q
    ||||||||||||||||||||  | ||||||||||||||||||||    
T  15039906 ggaaaacccttagaattcatagtgaattgtattgaaaaagatta 15039949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 382
Target Start/End: Original strand, 15041635 - 15041678
Alignment:
Q  339 ggaaaacccttagaattcattataaattgtattgaaaaagatta 382  Q
    ||||||||||||||||||||  | ||||||||||||||||||||    
T  15041635 ggaaaacccttagaattcatattgaattgtattgaaaaagatta 15041678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 382
Target Start/End: Complemental strand, 15112789 - 15112746
Alignment:
Q  339 ggaaaacccttagaattcattataaattgtattgaaaaagatta 382  Q
    ||||||||||||||||||||  | ||||||||||||||||||||    
T  15112789 ggaaaacccttagaattcatattgaattgtattgaaaaagatta 15112746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 382
Target Start/End: Complemental strand, 15114518 - 15114475
Alignment:
Q  339 ggaaaacccttagaattcattataaattgtattgaaaaagatta 382  Q
    ||||||||||||||||||||  | ||||||||||||||||||||    
T  15114518 ggaaaacccttagaattcatagtgaattgtattgaaaaagatta 15114475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 56 - 190
Target Start/End: Original strand, 4781083 - 4781217
Alignment:
Q  56 accaatgtttcatctgtggattttgaatccaaaacagccttataacctttgtatattggaccttcagatgattttatatcaccagaaacttcaatttctc 155  Q
    |||| |||||||||  ||||||||||||||||||||  ||| |||||||||||||| ||| | |||||||||||  | || || |     ||||||||||    
T  4781083 accagtgtttcatcaatggattttgaatccaaaacattcttgtaacctttgtatatgggatcctcagatgatttgttttctccggggctatcaatttctc 4781182  T
Q  156 cataaaaatattcattgacacaagctgcaatattt 190  Q
    |||||||||||||||||||||||||||||| ||||    
T  4781183 cataaaaatattcattgacacaagctgcaagattt 4781217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 256 - 343
Target Start/End: Original strand, 4781499 - 4781586
Alignment:
Q  256 aatttggcataccttctatagatttggcaaggccttcaagtttgaaagctgtggaatgatgaaggtcttcccctgaccaatttggaaa 343  Q
    ||||| ||||||| ||||||||||||||||| |||||||| |||||||| || |||| ||| |||||||| |||||||||||||||||    
T  4781499 aattttgcataccctctatagatttggcaagaccttcaagcttgaaagcagtagaattatgtaggtcttctcctgaccaatttggaaa 4781586  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 31134465 - 31134395
Alignment:
Q  28 gaatgaatcaaaacaagattggtagcttaccaatgtttcatctgtggattttgaatccaaaacagccttat 98  Q
    ||||||| ||||| ||||||| |||||||| || |||||||||||||  |||||||||||||||| |||||    
T  31134465 gaatgaaacaaaataagattgatagcttacaaaggtttcatctgtggtctttgaatccaaaacagtcttat 31134395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 382
Target Start/End: Original strand, 30187753 - 30187796
Alignment:
Q  339 ggaaaacccttagaattcattataaattgtattgaaaaagatta 382  Q
    |||||||||||| |||||||||| ||||||||||||||| ||||    
T  30187753 ggaaaacccttaaaattcattatgaattgtattgaaaaaaatta 30187796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 22692519 - 22692478
Alignment:
Q  340 gaaaacccttagaattcattataaattgtattgaaaaagatt 381  Q
    |||||||||||||||||||  | |||||||||||||||||||    
T  22692519 gaaaacccttagaattcatattgaattgtattgaaaaagatt 22692478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 382
Target Start/End: Complemental strand, 10866389 - 10866346
Alignment:
Q  339 ggaaaacccttagaattcattataaattgtattgaaaaagatta 382  Q
    ||||||||||||||||||||  ||||||||||||||||||||||    
T  10866389 ggaaaacccttagaattcatattaaattgtattgaaaaagatta 10866346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 385
Target Start/End: Complemental strand, 10868104 - 10868060
Alignment:
Q  341 aaaacccttagaattcattataaattgtattgaaaaagattatat 385  Q
    ||||||||||||||||||  | |||||||||||||||||||||||    
T  10868104 aaaacccttagaattcatattgaattgtattgaaaaagattatat 10868060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 382
Target Start/End: Complemental strand, 20186228 - 20186185
Alignment:
Q  339 ggaaaacccttagaattcattataaattgtattgaaaaagatta 382  Q
    ||||||||||||||||||||  | ||||||||||||||||||||    
T  20186228 ggaaaacccttagaattcatattgaattgtattgaaaaagatta 20186185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 347 - 385
Target Start/End: Complemental strand, 34244844 - 34244806
Alignment:
Q  347 cttagaattcattataaattgtattgaaaaagattatat 385  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  34244844 cttagaattcattatgaattgtattgaaaaagattatat 34244806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 30579989 - 30580030
Alignment:
Q  340 gaaaacccttagaattcattataaattgtattgaaaaagatt 381  Q
    |||||||||||||||||||||| ||||||| |||||||||||    
T  30579989 gaaaacccttagaattcattatgaattgtaatgaaaaagatt 30580030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 382
Target Start/End: Original strand, 17309792 - 17309833
Alignment:
Q  341 aaaacccttagaattcattataaattgtattgaaaaagatta 382  Q
    ||||||||||||||||||  | ||||||||||||||||||||    
T  17309792 aaaacccttagaattcatattgaattgtattgaaaaagatta 17309833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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