View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6270_high_3 (Length: 355)
Name: NF6270_high_3
Description: NF6270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6270_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 93546 - 93894
Alignment:
| Q |
1 |
ctcatgctcccctaccaagtcaaactgagctctgataccattgttgagacatgagggagaacctcattgagttggatcattatattgggttaagtacaat |
100 |
Q |
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| T |
93546 |
ctcatgctcccgtaccaagtcaaactgagctctgataccattgttgagacatgagggagaacctcattgagttggatcattatattgggttaagtacaat |
93645 |
T |
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| Q |
101 |
cgcacatgtgagattaataatatcaaatttgatgccatatcttcatccagaatattaaagcaataaatttatgagttctctaatttatatgttgctaaac |
200 |
Q |
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| T |
93646 |
cgcacatgtgagattaataatatcaaatttgatgccatatcttcacctagaatattaaagcaatacatttatgagttctctaatttatatgttgcttaac |
93745 |
T |
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| Q |
201 |
atcaactatttcaatcaatataaaactttaattcacacttgacgcatcacactaaaattatta-----------caaaacttttaatgttatgacattga |
289 |
Q |
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| T |
93746 |
atcaactctttcaatcaatataaaactttaattcacacttgacgcatcacactaaaattattagaaattttaatcaaaacttgtaatgttatgacattga |
93845 |
T |
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| Q |
290 |
aattgaatgtgcttctaagggctgctcagagggtaaaataagtacgcag |
338 |
Q |
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| T |
93846 |
aattgaatgtgcttctaagggctgctcagagggtaaaacaagtacgcag |
93894 |
T |
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