View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6270_low_1 (Length: 420)
Name: NF6270_low_1
Description: NF6270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6270_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 120; Significance: 3e-61; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 271 - 410
Target Start/End: Complemental strand, 14497297 - 14497158
Alignment:
| Q |
271 |
cccaaagaaagacaagaacttccaaagtgaaatactcaaatatggtaagtggtggttgcagcaatactaagaagccagtgaagattgtgattgtaactac |
370 |
Q |
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| T |
14497297 |
cccaaagaaagaaaagaacttctaaagtgaaatactcaaatatggcaagtggtggttgcagcaatagtaaaaagccagtgaagattgtgattgtaactac |
14497198 |
T |
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| Q |
371 |
agaatatgttgaaactgatgctatgagttttaagtctgtg |
410 |
Q |
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| T |
14497197 |
agaatatgttgaaactgatgctatgagttttaagtctgtg |
14497158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 294 - 410
Target Start/End: Complemental strand, 14504927 - 14504811
Alignment:
| Q |
294 |
aaagtgaaatactcaaatatggtaagtggtggttgcagcaatactaagaagccagtgaagattgtgattgtaactacagaatatgttgaaactgatgcta |
393 |
Q |
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| T |
14504927 |
aaagtgaaatacttgaatatggctagtggtggttgcagcaatagtaaaaagccagtgaagattgtgattataactacagaatatgttgaaactgatgcta |
14504828 |
T |
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| Q |
394 |
tgagttttaagtctgtg |
410 |
Q |
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| T |
14504827 |
tgagttttaagtctgtg |
14504811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 294 - 390
Target Start/End: Complemental strand, 14500917 - 14500821
Alignment:
| Q |
294 |
aaagtgaaatactcaaatatggtaagtggtggttgcagcaatactaagaagccagtgaagattgtgattgtaactacagaatatgttgaaactgatg |
390 |
Q |
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| T |
14500917 |
aaagtgaaatatttgaatatggagagtggtggttgcagcaatactaaaaagccattgaagattgtaattatcaccacagaatatgtggaaactgatg |
14500821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 294 - 404
Target Start/End: Complemental strand, 14499547 - 14499437
Alignment:
| Q |
294 |
aaagtgaaatactcaaatatggtaagtggtggttgcagcaatactaagaagccagtgaagattgtgattgtaactacagaatatgttgaaactgatgcta |
393 |
Q |
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| T |
14499547 |
aaagtgaaatacttgaatatggagagtggtggttgcagtaataacaagaatacagtgaaaattgtgattgtgactacagaatatgtgtaaactcatgtca |
14499448 |
T |
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| Q |
394 |
tgagttttaag |
404 |
Q |
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| T |
14499447 |
tgagttttaag |
14499437 |
T |
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