View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6270_low_5 (Length: 320)
Name: NF6270_low_5
Description: NF6270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6270_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 119 - 315
Target Start/End: Complemental strand, 37153407 - 37153211
Alignment:
| Q |
119 |
catccaggaaatgtactcgtatcgagattcacctgcttactgctcagggcttgcaggtatatattccaaatctatattctcttgtgtatttgcttctaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37153407 |
catccaggaaatgtactcgtatcgagattcacttgcttactgctcagggcttgcaggtatatattccaaatctatattctcttgtgtatttgcttctaaa |
37153308 |
T |
|
| Q |
219 |
tattcattttcaatcaattgatttccactaaaacttacttgaaactaaaattatttattcatatgtaaaagttagttcaaccataaactgatctctg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37153307 |
tattcattttcaatcaattgatttccactaaaacttacttgaaactaaaattatttattcatatgtaaaagttagttcaaccataaactgatttctg |
37153211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University