View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6270_low_6 (Length: 306)
Name: NF6270_low_6
Description: NF6270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6270_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 32096002 - 32096291
Alignment:
| Q |
1 |
tgagatggacatcatcattctggttttggcaaagtcaccgttgatccaaatatatatttggattaacaataagtttgacagaatcacactataccactat |
100 |
Q |
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|||||| ||||| ||||||||| |||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32096002 |
tgagattgacataatcattctgattttggcaaattcaccgttgattcaaacatatatttggattaacaataagtttgacagaatcacactgtaccactat |
32096101 |
T |
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| Q |
101 |
tgttttgtcaaaaatcactctttaaaactttaagaaaatcacgatatcactgtgattttatcaaactcatcgtcaatttcaatcatgcactaaatgttgt |
200 |
Q |
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||||||| ||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32096102 |
tgttttgccaaaaattactctttaaaactttaaaaaaattacgatatcactgtgattttatcaaactcatcgtcaatttcaatcatgcactaaatgttgt |
32096201 |
T |
|
| Q |
201 |
gaggtataatttggttaagtgctctcttaacttcaacaatactaactttcttcccatttccaccattttccttcaccttagccctcaact |
290 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32096202 |
gaggtataatttggttaagtgctctcttaacttccacaatactaactttcttcccatttccaccattttccttcaccttagccctcaact |
32096291 |
T |
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