View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6271_high_1 (Length: 397)
Name: NF6271_high_1
Description: NF6271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6271_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 34366896 - 34366514
Alignment:
| Q |
1 |
tccattaagacaagtaattatatatcttacgtagtaaactgcttcggtggcagccatagcaagaatatcagcacatgaaaccacgccagggcatcggttt |
100 |
Q |
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| T |
34366896 |
tccattaagacaagtaattatatatcttacgtagaaaactgcttcggtggcagccatagcaagaatatcagcacatgaaaccacgccagggcatcggttt |
34366797 |
T |
|
| Q |
101 |
tcaagctcgtctttgatatcatcaatgacttcatatcctcttaggctcaaatttgctggtgaatccttttctgctgtattatctttagtggaatcaagca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34366796 |
tcaagctcgtctttgatatcatcaatgacttcatatcctcttaggctcaaatttgctggtgaatccttttctgctgtattatccttagtggaatcaagca |
34366697 |
T |
|
| Q |
201 |
gaattgacccatcacatccctagtggacaaaaataaacaaatattaatgtcacatatgttaacgtgaataaactatataatgtagaaaatggaagcaata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34366696 |
gaattgacccatcacatccctagtggacaaaaataaacaaatattaatgtcacatatgttaacgtgaataaactatataatgtagaaaatggaagcaata |
34366597 |
T |
|
| Q |
301 |
cattgataaagtttgtttgtcctatagttgtagttgattgatgacataatattgcacgacaccacatacggtggacatttttg |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34366596 |
cattgataaagtttgtttgtcctatagttgtagttgattgatgacataatattgcacgacaccacatacggtggacatttttg |
34366514 |
T |
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