View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6271_high_3 (Length: 288)

Name: NF6271_high_3
Description: NF6271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6271_high_3
NF6271_high_3
[»] chr1 (19 HSPs)
chr1 (112-271)||(15550569-15550730)
chr1 (87-271)||(33616134-33616320)
chr1 (1-189)||(27054322-27054507)
chr1 (87-183)||(48814941-48815037)
chr1 (95-270)||(50592916-50593091)
chr1 (144-271)||(27055174-27055301)
chr1 (190-271)||(48813492-48813573)
chr1 (175-274)||(46602687-46602788)
chr1 (2-46)||(15550470-15550514)
chr1 (144-270)||(46601882-46602010)
chr1 (73-135)||(48814846-48814905)
chr1 (175-271)||(34660825-34660923)
chr1 (203-270)||(48826960-48827027)
chr1 (1-47)||(46602797-46602843)
chr1 (7-48)||(15551557-15551598)
chr1 (222-271)||(48814793-48814842)
chr1 (91-135)||(15551473-15551517)
chr1 (228-271)||(15551420-15551463)
chr1 (175-271)||(34661514-34661612)
[»] chr8 (9 HSPs)
chr8 (93-271)||(10161625-10161804)
chr8 (1-209)||(10161415-10161623)
chr8 (204-271)||(10162420-10162487)
chr8 (190-271)||(13904321-13904402)
chr8 (201-271)||(40808130-40808200)
chr8 (222-271)||(13906817-13906866)
chr8 (229-271)||(13906181-13906223)
chr8 (211-271)||(11919501-11919561)
chr8 (215-271)||(11918859-11918915)
[»] chr4 (12 HSPs)
chr4 (87-271)||(20378961-20379147)
chr4 (122-206)||(20321017-20321102)
chr4 (175-271)||(39719365-39719463)
chr4 (203-271)||(13210356-13210424)
chr4 (175-271)||(45282338-45282436)
chr4 (208-271)||(55536985-55537048)
chr4 (203-271)||(35012190-35012258)
chr4 (211-271)||(45630919-45630979)
chr4 (16-46)||(20320268-20320298)
chr4 (122-184)||(20320362-20320423)
chr4 (190-271)||(9800122-9800203)
chr4 (211-271)||(9799856-9799916)
[»] chr6 (9 HSPs)
chr6 (87-166)||(5948522-5948601)
chr6 (200-271)||(5948604-5948675)
chr6 (222-271)||(5949161-5949210)
chr6 (175-271)||(13000529-13000625)
chr6 (190-271)||(15717206-15717287)
chr6 (175-271)||(173658-173756)
chr6 (229-271)||(15716570-15716612)
chr6 (149-184)||(5949290-5949325)
chr6 (190-245)||(13000890-13000945)
[»] scaffold0108 (1 HSPs)
scaffold0108 (95-271)||(18700-18876)
[»] chr2 (7 HSPs)
chr2 (190-271)||(4631647-4631727)
chr2 (175-271)||(32342209-32342307)
chr2 (1-48)||(30777213-30777260)
chr2 (190-271)||(3403059-3403140)
chr2 (190-262)||(30777638-30777710)
chr2 (87-132)||(30777562-30777607)
chr2 (211-271)||(32342911-32342971)
[»] chr5 (12 HSPs)
chr5 (143-272)||(16438338-16438469)
chr5 (175-257)||(12374870-12374954)
chr5 (190-271)||(15696694-15696776)
chr5 (190-271)||(36037778-36037859)
chr5 (207-271)||(12374959-12375023)
chr5 (87-149)||(16437623-16437686)
chr5 (2-47)||(16438479-16438524)
chr5 (1-47)||(40796076-40796122)
chr5 (211-271)||(12375670-12375730)
chr5 (175-271)||(7672134-7672232)
chr5 (229-271)||(30487501-30487543)
chr5 (238-271)||(3517517-3517550)
[»] chr3 (16 HSPs)
chr3 (190-271)||(30163105-30163186)
chr3 (203-271)||(23156275-23156343)
chr3 (203-271)||(23156891-23156959)
chr3 (212-271)||(6177922-6177981)
chr3 (225-271)||(36590895-36590941)
chr3 (211-271)||(36590233-36590293)
chr3 (190-267)||(23155519-23155596)
chr3 (142-236)||(53685445-53685540)
chr3 (211-271)||(30162501-30162561)
chr3 (142-271)||(53668984-53669115)
chr3 (175-271)||(33544089-33544187)
chr3 (87-152)||(6177987-6178052)
chr3 (205-271)||(23156176-23156244)
chr3 (222-271)||(35344009-35344058)
chr3 (211-271)||(33543486-33543546)
chr3 (190-270)||(37472631-37472711)
[»] chr7 (5 HSPs)
chr7 (1-48)||(11019904-11019951)
chr7 (211-271)||(34239068-34239128)
chr7 (175-267)||(36389031-36389125)
chr7 (175-271)||(25964644-25964742)
chr7 (175-271)||(25965337-25965435)
[»] scaffold0018 (1 HSPs)
scaffold0018 (222-271)||(121991-122040)


Alignment Details
Target: chr1 (Bit Score: 111; Significance: 5e-56; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 112 - 271
Target Start/End: Original strand, 15550569 - 15550730
Alignment:
Q  112 gcagattttgacacgtgtcaaggccagccgttttttgttttgtcttgtagtgtattcaaaaaattgagaaaaagtttc--ttttgctcctagagggagtc 209  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| |||   ||||||||| ||||||||||    
T  15550569 gcagattttgacacgtgtcaaggccatccgttttttgttttgtcctgtagtgtattcagaaaattgagaaaaaattttaattttgctcccagagggagtc 15550668  T
Q  210 aaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    ||| ||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  15550669 aaatcaggcgcgtatgggacattgccattctctgttgccactaagccaatgtacatttgatg 15550730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 87 - 271
Target Start/End: Original strand, 33616134 - 33616320
Alignment:
Q  87 accgccaattgaaatggcggcaatagcagattttgacacgtgtcaaggccagccgttttttgttttgtcttgtagtgtattcaaaaaattgagaaaaagt 186  Q
    ||||||| |||||||||||| |   |||||||||||||| |||||| |||| ||| ||||||||||||| |||||||||| || |||||||||||||| |    
T  33616134 accgccatttgaaatggcgggaccggcagattttgacacatgtcaaagccaaccgctttttgttttgtcctgtagtgtatccagaaaattgagaaaaaat 33616233  T
Q  187 ttc--ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||  ||||| ||| ||||| | || |||||| | ||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33616234 ttcaattttgttcccagaggaaatcgaaccagacgcgtgtgggacattgccagtctgtgttgccactaagccagtgtacatttgatg 33616320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 27054322 - 27054507
Alignment:
Q  1 cttttgaccccatatgagaattaatgacataaatgacccactttcacannnnnnnnnnnnnnnnngttgtacagtgggccattaccaccgccaattgaaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||                 ||  |  ||||||||||||||   |||||||||||    
T  27054322 cttttgaccccatatgagaattaatgacaaaaatgacccactttcacatttttttaattttttttgtcctgtagtgggccattacc---gccaattgaaa 27054418  T
Q  101 tggcggcaatagcagattttgacacgtgtcaaggccagccgttttttgttttgtcttgtagtgtattcaaaaaattgagaaaaagtttc 189  Q
    || ||| |||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  27054419 tgacggaaatgacagattttgacacgtgtcaaggccagccgttttttgttttgtcctgtagtgtattcaaaaaattgagaaaaaatttc 27054507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 87 - 183
Target Start/End: Complemental strand, 48815037 - 48814941
Alignment:
Q  87 accgccaattgaaatggcggcaatagcagattttgacacgtgtcaaggccagccgttttttgttttgtcttgtagtgtattcaaaaaattgagaaaa 183  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||| | | ||||||||||||||||| ||||||||||||| |||||||||||||    
T  48815037 accgccaattgaaatggcgggaatggcagattttgacacgtgtcaagactaaccgttttttgttttgtcatgtagtgtattcagaaaattgagaaaa 48814941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 95 - 270
Target Start/End: Original strand, 50592916 - 50593091
Alignment:
Q  95 ttgaaatggcggcaatagcagattttgacacgtgtcaaggccagccgttttttgttttgtcttgtagtgtattcaaaaaattgagaaaaagtttc--ttt 192  Q
    |||||||||||| |   ||||||||||||||||||||| | ||||||||||||  |||||| ||||||||||||| |||||||||||||| ||||  |||    
T  50592916 ttgaaatggcgggaccggcagattttgacacgtgtcaaagtcagccgtttttt--tttgtcctgtagtgtattcagaaaattgagaaaaaatttcaattt 50593013  T
Q  193 tgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgat 270  Q
    || ||| ||||||| |||||||| ||||  ||| ||||||||||  ||| |||||||| ||||||||| | |||||||    
T  50593014 tgttcccagagggaatcaaaccaagcacacatgagacattgccaagctgcgttgccaccaagccagtgaaaatttgat 50593091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 144 - 271
Target Start/End: Complemental strand, 27055301 - 27055174
Alignment:
Q  144 ttttgttttgtcttgtagtgtattcaaaaaattgagaaaaagttt--cttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctg 241  Q
    |||||||||||||||||||||||| |||||||||||||||| |||   ||||||||| | |||||||| || |||||  |||||||||||||| ||| ||    
T  27055301 ttttgttttgtcttgtagtgtatttaaaaaattgagaaaaaattttaattttgctcccaaagggagtcgaa-caggcgtgtatgggacattgctattttg 27055203  T
Q  242 tgttgccactaagccagtgtacatttgatg 271  Q
    |||| |||||||| || || ||||||||||    
T  27055202 tgtt-ccactaagtcaatgcacatttgatg 27055174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 271
Target Start/End: Original strand, 48813492 - 48813573
Alignment:
Q  190 ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    ||||||||| |||||||||| || ||||| |||||| |||||||||||||| ||||||||||||| || |||||||||||||    
T  48813492 ttttgctcccagagggagtcgaatcaggcgcgtatgagacattgccattctctgttgccactaaggcattgtacatttgatg 48813573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 274
Target Start/End: Complemental strand, 46602788 - 46602687
Alignment:
Q  175 ttgagaaaaagtttc--ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatga 272  Q
    |||||||||| ||||  ||||||||| |||||||||| ||| |||| | ||||||||||||| ||||||| |||||| ||| | ||||||||||||||||    
T  46602788 ttgagaaaaaatttcaattttgctcccagagggagtcgaacgaggcgcctatgggacattgctattctgttttgccattaaactagtgtacatttgatga 46602689  T
Q  273 ta 274  Q
    ||    
T  46602688 ta 46602687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 15550470 - 15550514
Alignment:
Q  2 ttttgaccccatatgagaattaatgacataaatgacccactttca 46  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  15550470 ttttgaccccatatgagaattaatgacataaatgacccactttca 15550514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 144 - 270
Target Start/End: Original strand, 46601882 - 46602010
Alignment:
Q  144 ttttgttttgtcttgtagtgtattcaaaaaattgagaaaaagtttc--ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctg 241  Q
    |||| ||||||| ||||||||||||| |||||||||||||| ||||  ||||| | | | |||||||| || ||||  | |||| ||||||||  |||||    
T  46601882 tttttttttgtcctgtagtgtattcagaaaattgagaaaaaatttcaattttgtttccaaagggagtcgaagcaggagcctatgagacattgcttttctg 46601981  T
Q  242 tgttgccactaagccagtgtacatttgat 270  Q
    | |||||||||||| || |||||||||||    
T  46601982 ttttgccactaagcaagcgtacatttgat 46602010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 48814905 - 48814846
Alignment:
Q  73 agtgggccattaccaccgccaattgaaatggcggcaatagcagattttgacacgtgtcaaggc 135  Q
    |||||||||||||||||   |||||||||||||| ||| ||||||||||||||||||||||||    
T  48814905 agtgggccattaccacc---aattgaaatggcgggaatggcagattttgacacgtgtcaaggc 48814846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 34660825 - 34660923
Alignment:
Q  175 ttgagaaaaagtttc--ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||||||| ||||  |||||| ||||| |||| ||||||||||| | |||||  ||||| ||||| ||||| ||||||||||| |||||||||||||    
T  34660825 ttgagaaaaaatttcaattttgcacctagggggaatcaaaccaggcgcatatggatcattgacattcagtgttaccactaagccaatgtacatttgatg 34660923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 48826960 - 48827027
Alignment:
Q  203 gggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgat 270  Q
    |||| ||||||||||| | |||||| ||||||||||| ||||| ||||||||||| ||||||||||||    
T  48826960 gggaatcaaaccaggcgcatatgggtcattgccattcagtgttaccactaagccaatgtacatttgat 48827027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 46602843 - 46602797
Alignment:
Q  1 cttttgaccccatatgagaattaatgacataaatgacccactttcac 47  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||    
T  46602843 ctttagaccccatatgagaattaatgacataaatgacctactttcac 46602797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 15551598 - 15551557
Alignment:
Q  7 accccatatgagaattaatgacataaatgacccactttcaca 48  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  15551598 accccctatgagaattaatgacataaatgacccactttcaca 15551557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 48814842 - 48814793
Alignment:
Q  222 tatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||||||||| ||||||||||||||||||| ||| |||||||||||||    
T  48814842 tatgggacattgtcattctgtgttgccactaaaccaatgtacatttgatg 48814793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 15551517 - 15551473
Alignment:
Q  91 ccaattgaaatggcggcaatagcagattttgacacgtgtcaaggc 135  Q
    |||||||||||||| | ||| ||||||||||||||||||||||||    
T  15551517 ccaattgaaatggcaggaatggcagattttgacacgtgtcaaggc 15551473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 15551463 - 15551420
Alignment:
Q  228 acattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||| ||||||||||||||||||| ||| |||||||||||||    
T  15551463 acattgtcattctgtgttgccactaaaccaatgtacatttgatg 15551420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 34661612 - 34661514
Alignment:
Q  175 ttgagaaaaagtttc--ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||||||| ||||  |||||| || || |||| || |||||||| | |||| | ||||||||||| ||||| |||||||| || |||||||||||||    
T  34661612 ttgagaaaaaatttcaattttgcacccagggggaatcgaaccaggcgcatatgagtcattgccattcagtgttaccactaagtcaatgtacatttgatg 34661514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 93 - 271
Target Start/End: Original strand, 10161625 - 10161804
Alignment:
Q  93 aattgaaatggcggcaatagcagattttgacacgtgtcaaggccagccgttttttgttttgtcttgtagtgtattcaaaaaattgagaaaaagttt--ct 190  Q
    ||||||||||| || ||| ||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||| |||||||||||||| |||   |    
T  10161625 aattgaaatggtgggaatggcagattttgacacgtgtcaaggccggtcgttttttgttttgtcctgtagtgtattcagaaaattgagaaaaaattttaat 10161724  T
Q  191 tttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||||| ||| ||||||||||||||| | |||| |||||||| ||||||| ||||||||||| ||||||||||||||||    
T  10161725 tttgctcccaga-ggagtcaaaccaggcgcctatgagacattgctattctgttttgccactaagtcagtgtacatttgatg 10161804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 10161415 - 10161623
Alignment:
Q  1 cttttgaccccatatgagaattaatgacataaatgacccactttcacannnnnnnnnnnnnnnnngttgtacagtgggccattaccaccgccaattgaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||                 ||  |  ||||||||||||||   |||||||||||    
T  10161415 cttttgaccccatatgagaattaatgacataaatgacccactttcacattttttaatttttttttgtcctgtagtgggccattacc---gccaattgaaa 10161511  T
Q  101 tggcggcaatagcagattttgacacgtgtcaaggccagccgttttttgttttgtcttgtagtgtattcaaaaaattgag-aaaaagtttc--ttttgctc 197  Q
    |||||| ||| ||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||| ||||||||| ||||| ||||  ||||||||    
T  10161512 tggcgggaatggcagattttgacacgtgccaaggccagtcgttttttgttttgtcatgtagtgtattcagaaaattgagaaaaaaatttcaattttgctc 10161611  T
Q  198 ctagagggagtc 209  Q
    | ||||||||||    
T  10161612 ccagagggagtc 10161623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 10162487 - 10162420
Alignment:
Q  204 ggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||| |||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  10162487 ggagtcgaaccaggcgcgtatgggtcattgccattttgtgttgccactaagccagtgtacatttgatg 10162420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 271
Target Start/End: Original strand, 13904321 - 13904402
Alignment:
Q  190 ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    ||||||||| || ||||||| |||||||| | |||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  13904321 ttttgctcccagggggagtcgaaccaggcgcatatgggacattgtcattctatgttgccactaagccaatgtacatttgatg 13904402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 271
Target Start/End: Complemental strand, 40808200 - 40808130
Alignment:
Q  201 gagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    ||||||||||||| | |||| |||| || |||| |||||| ||||||||||||| ||||||||||||||||    
T  40808200 gagggagtcaaactaagcacctatgagatattgtcattctttgttgccactaagtcagtgtacatttgatg 40808130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 13906866 - 13906817
Alignment:
Q  222 tatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||||||||    
T  13906866 tatgggtcattgccattctgtgttaccactaagccaatgtacatttgatg 13906817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 13906181 - 13906223
Alignment:
Q  229 cattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    ||||| ||||||||||||||||||||||| |||||||||||||    
T  13906181 cattgtcattctgtgttgccactaagccaatgtacatttgatg 13906223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 11919561 - 11919501
Alignment:
Q  211 aaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||| ||| |||||| ||||||||||  ||||| ||||||||||| |||||||||||||    
T  11919561 aaccagacacatatgggtcattgccatttagtgttaccactaagccattgtacatttgatg 11919501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 11918859 - 11918915
Alignment:
Q  215 aggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||| |||||| ||||||||||| ||||| |||||||  || |||||||||||||    
T  11918859 aggcacatatgggtcattgccattcagtgttaccactaaatcaatgtacatttgatg 11918915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 87 - 271
Target Start/End: Complemental strand, 20379147 - 20378961
Alignment:
Q  87 accgccaattgaaatggcggcaatagcagattttgacacgtgtcaaggccagccgttttttgttttgtcttgtagtgtattcaaaaaattgagaaaaagt 186  Q
    ||||||| |||||||||||| |   ||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||  ||||||||||||| |    
T  20379147 accgccatttgaaatggcgggaccggcagattttgacacgtgtcaaagccagctgctttttgttttgtcttgtagtgtattcaggaaattgagaaaaaat 20379048  T
Q  187 ttc--ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||  ||||| ||| ||||||| ||||||||||| ||| || ||||||||||  ||||||| |||||||||||||| | ||||||||    
T  20379047 ttcaattttgttcccagagggaatcaaaccaggcgcgtgtgagacattgccaggctgtgttaccactaagccagtgaagatttgatg 20378961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 20321102 - 20321017
Alignment:
Q  122 acacgtgtcaaggccagccgttttttgttttgtcttgtagtgtattcaaaaaattgagaaaaagtttc--ttttgctcctagaggga 206  Q
    |||||||| || ||||||| |||||||||||||| | ||||||||||| |||||||||||||| ||||  |||||||||||||||||    
T  20321102 acacgtgttaatgccagcc-ttttttgttttgtcctctagtgtattcagaaaattgagaaaaaatttcaattttgctcctagaggga 20321017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 39719365 - 39719463
Alignment:
Q  175 ttgagaaaaagtttc--ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||||||| ||||  |||||| || || |||| ||||||||||||| |||||| ||||| ||||| ||||| ||||||||||| |||||||||||||    
T  39719365 ttgagaaaaaatttcaattttgcacccagggggaatcaaaccaggcacatatgggtcattgtcattcagtgttaccactaagccaatgtacatttgatg 39719463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 13210424 - 13210356
Alignment:
Q  203 gggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    ||||||| ||||||||   |||||||||||||||||||||||| ||||||||||| |||||| ||||||    
T  13210424 gggagtcgaaccaggcgtatatgggacattgccattctgtgttaccactaagccaatgtacaattgatg 13210356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 45282436 - 45282338
Alignment:
Q  175 ttgagaaaaagtttc--ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||||||| ||||  |||||| || || |||| ||||||||||| | |||||| |||||||||||| |||| ||||||||||| | |||||||||||    
T  45282436 ttgagaaaaaatttcaattttgcacccagggggaatcaaaccaggcgcatatgggtcattgccattctatgttaccactaagccaatatacatttgatg 45282338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 271
Target Start/End: Original strand, 55536985 - 55537048
Alignment:
Q  208 tcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    ||||||||||| | |||||| ||||| ||||||||||| ||||||||||| |||||||||||||    
T  55536985 tcaaaccaggcgcatatgggtcattgtcattctgtgttaccactaagccaatgtacatttgatg 55537048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 35012190 - 35012258
Alignment:
Q  203 gggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||| |||||||| || | |||||| ||||||||||||||||| |||||||| || |||||||||||||    
T  35012190 gggaatcaaaccaagcgcatatgggtcattgccattctgtgttaccactaagtcaatgtacatttgatg 35012258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 45630979 - 45630919
Alignment:
Q  211 aaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||||| | |||||| ||||| ||||||||||| ||||||||||| |||||||||||||    
T  45630979 aaccaggcgcatatgggtcattgtcattctgtgttaccactaagccaatgtacatttgatg 45630919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 20320268 - 20320298
Alignment:
Q  16 gagaattaatgacataaatgacccactttca 46  Q
    |||||||||||||||||||||||||||||||    
T  20320268 gagaattaatgacataaatgacccactttca 20320298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 20320362 - 20320423
Alignment:
Q  122 acacgtgtcaaggccagccgttttttgttttgtcttgtagtgtattcaaaaaattgagaaaaa 184  Q
    ||||||||||| | |||||||||| ||||||||| | ||||||||||  ||||||||||||||    
T  20320362 acacgtgtcaatgtcagccgtttt-tgttttgtcctctagtgtattctgaaaattgagaaaaa 20320423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 271
Target Start/End: Complemental strand, 9800203 - 9800122
Alignment:
Q  190 ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||| |||||||||| || ||||||||   |||||| |||||||||||  |||| ||||||| ||| | |||||||||||    
T  9800203 ttttgcacctagagggaatcgaaccaggcgaatatgggtcattgccattcaatgttaccactaaaccaatatacatttgatg 9800122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 9799856 - 9799916
Alignment:
Q  211 aaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||||||| |||||  ||||| ||||| |||||  |||||||||| |||||||||||||    
T  9799856 aaccaggcacatatggatcattgtcattcagtgttatcactaagccaatgtacatttgatg 9799916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 5948522 - 5948601
Alignment:
Q  87 accgccaattgaaatggcggcaatagcagattttgacacgtgtcaaggccagccgttttttgttttgtcttgtagtgtat 166  Q
    ||||||||||||||||| || |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5948522 accgccaattgaaatggtgggaatgacagattttgacacgtgtcaaggccagccgttttttgttttgtcttgtagtgtat 5948601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 200 - 271
Target Start/End: Original strand, 5948604 - 5948675
Alignment:
Q  200 agagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||| |||||||||||| |||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  5948604 agagggggtcaaaccaggcgcgtatgggacattatcattatgtgttaccactaagccagtgtacatttgatg 5948675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 5949210 - 5949161
Alignment:
Q  222 tatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||    
T  5949210 tatgggacattgccattctgtgttgccactaagtcaatgtacatttgatg 5949161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 13000529 - 13000625
Alignment:
Q  175 ttgagaaaaagtttc--ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||||||| ||||  ||||||||| || ||||||| |||||||| | |||||||||||| |||  ||||||| |||||||||| |||||||||||||    
T  13000529 ttgagaaaaaatttcaattttgctcccagggggagtcgaaccaggcgcatatgggacattgtcat--tgtgttgtcactaagccaatgtacatttgatg 13000625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 271
Target Start/End: Complemental strand, 15717287 - 15717206
Alignment:
Q  190 ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    ||||||||| |  |||| || |||||||| | |||||| || |||||||||||||| ||||||||||| |||||||||||||    
T  15717287 ttttgctccgatggggaatcgaaccaggcgcatatgggtcactgccattctgtgttaccactaagccaatgtacatttgatg 15717206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 173658 - 173756
Alignment:
Q  175 ttgagaaaaagtttc--ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||||||| ||||  |||||| || || |||| || |||||||| | |||| | ||||| ||||||||||| ||||||||||| |||||||||||||    
T  173658 ttgagaaaaaatttcaattttgcacccagggggaatcgaaccaggcgcatatgagtcattgtcattctgtgttaccactaagccactgtacatttgatg 173756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 15716570 - 15716612
Alignment:
Q  229 cattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    ||||| ||||||||||||||||||||||| |||||||||||||    
T  15716570 cattgtcattctgtgttgccactaagccaatgtacatttgatg 15716612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 184
Target Start/End: Complemental strand, 5949325 - 5949290
Alignment:
Q  149 ttttgtcttgtagtgtattcaaaaaattgagaaaaa 184  Q
    ||||||||||||||||||||| ||||||||||||||    
T  5949325 ttttgtcttgtagtgtattcagaaaattgagaaaaa 5949290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 13000945 - 13000890
Alignment:
Q  190 ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgtt 245  Q
    |||||||||||| ||||||| |||||||| | |||||| |||||| ||||||||||    
T  13000945 ttttgctcctagggggagtcgaaccaggcgcatatgggtcattgctattctgtgtt 13000890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 271
Target Start/End: Complemental strand, 18876 - 18700
Alignment:
Q  95 ttgaaatggcggcaatagcagattttgacacgtgtcaaggccagccgttttttgttttgtcttgtagtgtattcaaaaaattgagaaaaagtttc--ttt 192  Q
    |||||||||||| |   ||||||||||||||||||||| | |||||||||||| ||||||| ||||||||||||| |||||||||||||| ||||  |||    
T  18876 ttgaaatggcgggaccggcagattttgacacgtgtcaaagtcagccgtttttt-ttttgtcctgtagtgtattcagaaaattgagaaaaaatttcaattt 18778  T
Q  193 tgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    || ||| ||||| | ||||||||||||||  || |||||| |||  |||  ||||||| ||||||||| | ||||||||    
T  18777 tgttcccagaggaaatcaaaccaggcacgcgtgagacatt-ccaggctgctttgccaccaagccagtgaagatttgatg 18700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 190 - 271
Target Start/End: Original strand, 4631647 - 4631727
Alignment:
Q  190 ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    ||||||||| || ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4631647 ttttgctcccag-gggagtcgaaccaggcgcgtatgggacattgccattctgtgttgccactaagccaatgtacatttgatg 4631727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 32342209 - 32342307
Alignment:
Q  175 ttgagaaaaagtttc--ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||||||| ||||  |||||| || || |||| ||||||||||| | |||||| ||||||||||| ||||| ||||||||||| |||||||||||||    
T  32342209 ttgagaaaaaatttcaattttgcacccagggggaatcaaaccaggcgcatatgggtcattgccattcagtgttaccactaagccaatgtacatttgatg 32342307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 30777213 - 30777260
Alignment:
Q  1 cttttgaccccatatgagaattaatgacataaatgacccactttcaca 48  Q
    ||||||||| | |||||||||||||||||||||||| |||||||||||    
T  30777213 cttttgacctcctatgagaattaatgacataaatgatccactttcaca 30777260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 271
Target Start/End: Complemental strand, 3403140 - 3403059
Alignment:
Q  190 ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    ||||| ||||||||||| || ||||||||||| ||  ||||||||||  ||| |||||||| ||||||||| | ||||||||    
T  3403140 ttttgttcctagagggaatcgaaccaggcacgcataagacattgccaggctgcgttgccaccaagccagtgaagatttgatg 3403059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 262
Target Start/End: Original strand, 30777638 - 30777710
Alignment:
Q  190 ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgta 262  Q
    ||||||||| ||  ||||||||| ||||| |||||||||||  || ||  |||||||||||||||||||||||    
T  30777638 ttttgctcccagcaggagtcaaatcaggcgcgtatgggacaaagcaatcatgtgttgccactaagccagtgta 30777710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 30777562 - 30777607
Alignment:
Q  87 accgccaattgaaatggcggcaatagcagattttgacacgtgtcaa 132  Q
    |||||||| |||||| |||| ||| |||||||||||||||||||||    
T  30777562 accgccaaatgaaatcgcgggaatggcagattttgacacgtgtcaa 30777607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 32342971 - 32342911
Alignment:
Q  211 aaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||||| | |||||| ||||||||||| || || |||||||| || |||||||||||||    
T  32342971 aaccaggcgcatatgggtcattgccattcagttttaccactaagacaatgtacatttgatg 32342911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 143 - 272
Target Start/End: Complemental strand, 16438469 - 16438338
Alignment:
Q  143 tttttgttttgtcttgtagtgtattcaaaaaattgagaaaaagtttc--ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattct 240  Q
    ||||| ||||||| ||||||||||||| ||||||| |||||| | ||  ||||||||| |||  |||||||||||||| | ||||||||||||| |||||    
T  16438469 ttttttttttgtcatgtagtgtattcagaaaattgtgaaaaaatatcagttttgctcccagaatgagtcaaaccaggcgcctatgggacattgcaattct 16438370  T
Q  241 gtgttgccactaagccagtgtacatttgatga 272  Q
    || || ||||||| |||||||| |||||||||    
T  16438369 gttttaccactaaaccagtgtagatttgatga 16438338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 257
Target Start/End: Original strand, 12374870 - 12374954
Alignment:
Q  175 ttgagaaaaagtttc--ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagcca 257  Q
    |||||||||| ||||  |||||||||||| ||||||| |||||||| ||||||| ||||||||||| ||||||||||||||||||    
T  12374870 ttgagaaaaaatttcaattttgctcctagggggagtcgaaccaggcgcgtatggaacattgccattatgtgttgccactaagcca 12374954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 271
Target Start/End: Complemental strand, 15696776 - 15696694
Alignment:
Q  190 ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagc-cagtgtacatttgatg 271  Q
    ||||||||| || ||||||||||| |||| | ||||||||||| ||||| |||||||||||||||| || |||||||||||||    
T  15696776 ttttgctcccagggggagtcaaacaaggcgcatatgggacattaccattttgtgttgccactaagcacaatgtacatttgatg 15696694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 190 - 271
Target Start/End: Complemental strand, 36037859 - 36037778
Alignment:
Q  190 ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||| || || |||| ||||||||||| | |||||| ||||||||||| ||||| ||||||||||| |||||||||||||    
T  36037859 ttttgcacccagggggaatcaaaccaggcgcatatgggtcattgccattcagtgttaccactaagccaatgtacatttgatg 36037778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 271
Target Start/End: Original strand, 12374959 - 12375023
Alignment:
Q  207 gtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||||||||| ||||| ||||||||||||| |||||||||||||| ||| |||| ||||||||    
T  12374959 gtcaaaccaggcgcgtattggacattgccattatgtgttgccactaaaccaatgtatatttgatg 12375023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 16437623 - 16437686
Alignment:
Q  87 accgccaattgaaatggcggcaatagcagattttgacacgtgtc-aaggccagccgttttttgt 149  Q
    |||||||||||||||||||| |||  |||||||||||||||||| ||| |||||||||||||||    
T  16437623 accgccaattgaaatggcgggaatgacagattttgacacgtgtcaaagaccagccgttttttgt 16437686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 16438524 - 16438479
Alignment:
Q  2 ttttgaccccatatgagaattaatgacataaatgacccactttcac 47  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||    
T  16438524 ttttgaccccatatgagaattaatgacataaatgatccattttcac 16438479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 40796076 - 40796122
Alignment:
Q  1 cttttgaccccatatgagaattaatgacataaatgacccactttcac 47  Q
    ||||||||| ||||||| ||||||| |||||||||||||||||||||    
T  40796076 cttttgacctcatatgaaaattaataacataaatgacccactttcac 40796122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 12375730 - 12375670
Alignment:
Q  211 aaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||||| | |||||| ||||| ||||||||||| ||| ||||||| |||||||||||||    
T  12375730 aaccaggcgcatatgggtcattgtcattctgtgttaccattaagccaatgtacatttgatg 12375670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 7672232 - 7672134
Alignment:
Q  175 ttgagaaaaagtttc--ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||||||| ||||  |||||| || || |||| || |||||||| | |||||| || |||||||| ||||| ||||||||||| | |||||||||||    
T  7672232 ttgagaaaaaatttcaattttgcacccagggggaatcgaaccaggcgcatatgggtcaatgccattcagtgttaccactaagccaatatacatttgatg 7672134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 271
Target Start/End: Complemental strand, 30487543 - 30487501
Alignment:
Q  229 cattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||    
T  30487543 cattgccattcagtgttaccactaagccaatgtacatttgatg 30487501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Original strand, 3517517 - 3517550
Alignment:
Q  238 tctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||||| |||||||||||||||||||||||||    
T  3517517 tctgtgttaccactaagccagtgtacatttgatg 3517550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 190 - 271
Target Start/End: Complemental strand, 30163186 - 30163105
Alignment:
Q  190 ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    ||||||||| || ||||||| |||||||| | |||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  30163186 ttttgctcccagggggagtcgaaccaggcgcatatgagacattgccattctgtgttgccactaagccaatgtacatttgatg 30163105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 23156275 - 23156343
Alignment:
Q  203 gggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    ||||||| |||||||| | |||||| ||||||||||||||||| ||||||||||| |||||||||||||    
T  23156275 gggagtcgaaccaggcgcatatgggtcattgccattctgtgttaccactaagccaatgtacatttgatg 23156343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 23156959 - 23156891
Alignment:
Q  203 gggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    ||||||| |||||||||| ||||| ||||||||||||| |||||||||||| ||| |||||||||||||    
T  23156959 gggagtcgaaccaggcacatatggaacattgccattctatgttgccactaaaccaatgtacatttgatg 23156891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 212 - 271
Target Start/End: Complemental strand, 6177981 - 6177922
Alignment:
Q  212 accaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    ||||||||||| || ||||||| || ||||||||||||||||||||||||||||||||||    
T  6177981 accaggcacgtgtgagacattgtcagtctgtgttgccactaagccagtgtacatttgatg 6177922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 271
Target Start/End: Complemental strand, 36590941 - 36590895
Alignment:
Q  225 gggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  36590941 gggacattgccattctgtgttgccactaagccaatgtacatttgatg 36590895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 36590233 - 36590293
Alignment:
Q  211 aaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||||| | |||||| ||||||||||||||||| ||||||||||| |||||||||||||    
T  36590233 aaccaggcgcatatgggtcattgccattctgtgttaccactaagccaatgtacatttgatg 36590293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 267
Target Start/End: Original strand, 23155519 - 23155596
Alignment:
Q  190 ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacattt 267  Q
    ||||||||| || ||||||| ||| |||||||||||| ||||||||| | ||||||| |||||||| | |||||||||    
T  23155519 ttttgctcccagggggagtcgaactaggcacgtatggaacattgccactatgtgttgtcactaagctaatgtacattt 23155596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 53685540 - 53685445
Alignment:
Q  142 ttttttgttttgtcttgtagtgtattcaaaaaattgagaaaaagtttc--ttttgctcctagagggagtcaaaccaggcacgtatgggacattgcca 236  Q
    |||||| ||||||| | ||||||||||| |||||||||||||| ||||  ||||| ||| ||||||| ||||||||||||||  || ||||||||||    
T  53685540 tttttttttttgtcctatagtgtattcagaaaattgagaaaaa-tttcaattttgttcccagagggaatcaaaccaggcacgcgtgagacattgcca 53685445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 30162501 - 30162561
Alignment:
Q  211 aaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||||| | |||||  ||||||||||||||||| ||||||||||| |||||||||||||    
T  30162501 aaccaggcgcatatggatcattgccattctgtgttaccactaagccaatgtacatttgatg 30162561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 271
Target Start/End: Complemental strand, 53669115 - 53668984
Alignment:
Q  142 ttttttgttttgtcttgtagtgtattcaaaaaattgagaaaaagtttc--ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattc 239  Q
    |||||| ||||||| ||||||||||||| |||||||||||||| ||||  ||||| ||| ||||  | || |||||||||||  || ||||||||||  |    
T  53669115 tttttttttttgtcctgtagtgtattcagaaaattgagaaaaaatttcaattttgttcccagagttaatcgaaccaggcacgcgtgagacattgccaggc 53669016  T
Q  240 tgtgttgccactaagccagtgtacatttgatg 271  Q
    || ||| |||| |||||| || | ||||||||    
T  53669015 tgcgttaccaccaagccaatgaagatttgatg 53668984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 33544187 - 33544089
Alignment:
Q  175 ttgagaaaaagtttc--ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||||||| ||||  |||||| || || |||| |||||||| |  | |||||| ||||||||||||||||| |||||| |||| |||||||||||||    
T  33544187 ttgagaaaaaatttcaattttgcacccagggggaatcaaaccaagtgcatatgggtcattgccattctgtgttaccactacgccaatgtacatttgatg 33544089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 6178052 - 6177987
Alignment:
Q  87 accgccaattgaaatggcggcaatagcagattttgacacgtgtcaaggccagccgttttttgtttt 152  Q
    |||||||  ||||||||||| |   ||||||||||||||||||||| | |||||| ||||||||||    
T  6178052 accgccatatgaaatggcgggaccggcagattttgacacgtgtcaaaggcagccgctttttgtttt 6177987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 271
Target Start/End: Complemental strand, 23156244 - 23156176
Alignment:
Q  205 gagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagcca--gtgtacatttgatg 271  Q
    ||||| |||||||| | |||||| ||||| ||||||||||| |||||||||||   |||||||||||||    
T  23156244 gagtcgaaccaggcgcatatgggtcattgtcattctgtgttaccactaagccaatatgtacatttgatg 23156176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 35344058 - 35344009
Alignment:
Q  222 tatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||| ||||||||||| ||||| ||| ||||||| |||||||||||||    
T  35344058 tatgggtcattgccattcagtgttaccattaagccaatgtacatttgatg 35344009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 33543486 - 33543546
Alignment:
Q  211 aaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||||| | |||||| || |||||||| ||||| ||||||||||| | |||||||||||    
T  33543486 aaccaggcgcatatgggtcaatgccattcagtgttaccactaagccaatatacatttgatg 33543546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 270
Target Start/End: Complemental strand, 37472711 - 37472631
Alignment:
Q  190 ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgat 270  Q
    |||||| || || |||| || |||||||| | || ||| ||||||||||| ||||| ||||||| ||| ||||||||||||    
T  37472711 ttttgcacccagggggaatcgaaccaggcgcatacgggtcattgccattcagtgttaccactaaaccaatgtacatttgat 37472631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 11019904 - 11019951
Alignment:
Q  1 cttttgaccccatatgagaattaatgacataaatgacccactttcaca 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11019904 cttttgaccccatatgagaattaatgacataaatgacccactttcaca 11019951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 34239128 - 34239068
Alignment:
Q  211 aaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||||||| |||||| ||||||||||||||||| ||||||||||| | |||||||||||    
T  34239128 aaccaggcacatatgggtcattgccattctgtgttaccactaagccaatatacatttgatg 34239068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 267
Target Start/End: Complemental strand, 36389125 - 36389031
Alignment:
Q  175 ttgagaaaaagtttc--ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacattt 267  Q
    |||||||||| ||||  |||||| || || |||| || |||||||||| |||||| ||||||||||||||||| |||||||| || |||||||||    
T  36389125 ttgagaaaaaatttcaattttgcacccagggggaatcgaaccaggcacatatgggtcattgccattctgtgttaccactaagtcaatgtacattt 36389031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 25964644 - 25964742
Alignment:
Q  175 ttgagaaaaagtttc--ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||||||| ||||  |||||| || || |||| ||||||||||| |  ||  | ||||||||||||||||| ||||||||||| |||||||||||||    
T  25964644 ttgagaaaaaatttcaattttgcacccagggggaatcaaaccaggcgcacatatgtcattgccattctgtgttaccactaagccaatgtacatttgatg 25964742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 25965435 - 25965337
Alignment:
Q  175 ttgagaaaaagtttc--ttttgctcctagagggagtcaaaccaggcacgtatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||||||| ||||  |||||| || || |||| ||||||||||| | |||||| ||||| ||||| ||||| ||||||||||| | |||||||||||    
T  25965435 ttgagaaaaaatttcaattttgcacccagggggaatcaaaccaggcgcatatgggtcattgtcattcagtgttaccactaagccaatatacatttgatg 25965337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 122040 - 121991
Alignment:
Q  222 tatgggacattgccattctgtgttgccactaagccagtgtacatttgatg 271  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||||||||    
T  122040 tatgggtcattgccattctgtgttaccactaagccaatgtacatttgatg 121991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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