View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6271_low_4 (Length: 282)
Name: NF6271_low_4
Description: NF6271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6271_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 10578946 - 10578723
Alignment:
| Q |
16 |
atcatgtcgaatattaaaatttgagtcatttgtcaaggagaactaacatcttaaaacacaacaatgctacagcatcagaatttgacaacattatagcgta |
115 |
Q |
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| T |
10578946 |
atcatgtcgaatattaaaatttgagtcatttgtcaaggagaactaacatcttaaaacacaacaatgctacagcatcagaatttgacaacattatagcgta |
10578847 |
T |
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| Q |
116 |
aataaatacgggttcgaagaacaatagcaatctgttcaagttctgttacaatcttagctgccaatggattc--nnnnnnnnncttcacgacattaatata |
213 |
Q |
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| T |
10578846 |
aataaatacgggttcgaagaacaatagcaatctgttcaagttctgttacaatcttagctgccaatggattcttttttttttttttcacgacattaatata |
10578747 |
T |
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| Q |
214 |
caactactaaaataaaaccaatgg |
237 |
Q |
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| T |
10578746 |
caactactaaaataaaaccaatgg |
10578723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 180
Target Start/End: Complemental strand, 352126 - 352037
Alignment:
| Q |
87 |
gcatcagaatttgacaacattatagcgtaaataaatacgggttcgaagaacaatagcaatctgttcaagttctgttacaatcttagctgccaat |
180 |
Q |
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| T |
352126 |
gcatcagaatttaacaacattatag----actaattacggcttcgaagaacaatagcaatctgttcaagttctgatacattcttagctgccaat |
352037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 186
Target Start/End: Complemental strand, 24577166 - 24577066
Alignment:
| Q |
82 |
ctacagcatcagaatttgacaacattatagcgtaaataaatacgggttcgaagaacaatagcaatctgttcaagttctgttacaatcttagctgccaatg |
181 |
Q |
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| T |
24577166 |
ctacagcatcagaagttgacaacattatagagtaaata----cgggcaccatgaacaatagcaatatgttaaagttctgttacaatcttagttgccaacg |
24577071 |
T |
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| Q |
182 |
gattc |
186 |
Q |
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||||| |
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| T |
24577070 |
gattc |
24577066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 24577371 - 24577319
Alignment:
| Q |
16 |
atcatgtcgaatattaaaatttgagtcatttgtcaaggagaactaacatctta |
68 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24577371 |
atcatgtcgaatattaaaatttgagtcatttcccaaggagaactaacatctta |
24577319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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