View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6271_low_6 (Length: 237)
Name: NF6271_low_6
Description: NF6271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6271_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 24719216 - 24719436
Alignment:
| Q |
1 |
tctaaaatgacagaagaaattgaaattccttgacaccgtaaggccnnnnnnnatcgatcaagctagtcactgatatcaaatatgaccgagaattttgaat |
100 |
Q |
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| T |
24719216 |
tctaaaatgacagaagaaattgaaattccttgacaccgtaaggcctttttttatcgatcaagctagtcactgatatcaaatatgaccgagaattttgaat |
24719315 |
T |
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| Q |
101 |
tctagggatatatcaaaattttcttagttgcaggacaaaacttcctaatcccttgccattttgtgaaatccgtattggttttttcaaggtgcatggactt |
200 |
Q |
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| T |
24719316 |
ttcagggatatatcaaaattttcttagttgcaggacaaaacttcctaatcccttgccattttgtgaaatccgtattggttttttcaaggtgcatggactt |
24719415 |
T |
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| Q |
201 |
ggaccgcgtattattctaata |
221 |
Q |
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||||||||||||| ||||||| |
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| T |
24719416 |
ggaccgcgtattagtctaata |
24719436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 53 - 221
Target Start/End: Original strand, 24677837 - 24678005
Alignment:
| Q |
53 |
atcgatcaagctagtcactgatatcaaatatgaccgagaattttgaattctagggatatatcaaaattttcttagttgcaggacaaaacttcctaatccc |
152 |
Q |
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||||||||| |||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||| |||| || |||| ||||||||| |||||| |
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| T |
24677837 |
atcgatcaacctagtcaccgatatctaatatgaccgagaattttgaatttcagggatatatcaaaattttgttagctggaggataaaacttcccaatccc |
24677936 |
T |
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| Q |
153 |
ttgccattttgtgaaatccgtattggttttttcaaggtgcatggacttggaccgcgtattattctaata |
221 |
Q |
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| T |
24677937 |
ttgccattttttgaaatccgtattggtttttacaaggcgcatgaacttggacggcgtattagtctaata |
24678005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 53 - 213
Target Start/End: Original strand, 24686540 - 24686699
Alignment:
| Q |
53 |
atcgatcaagctagtcactgatatcaaatatgaccgagaattttgaattctagggatatatcaaaattttcttagttgcaggacaaaacttcctaatccc |
152 |
Q |
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||||||||| ||||||||||||||| ||||||| |||||||||| ||||| | |||||||| ||||||| ||||||||||||||||||| | |||||| |
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| T |
24686540 |
atcgatcaatctagtcactgatatctaatatgatcgagaattttcaattccaaggatatattgaaattttgttagttgcaggacaaaactccgcaatccc |
24686639 |
T |
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| Q |
153 |
ttgccattttgtgaaatccgtattggttttttcaaggtgcatggacttggaccgcgtatta |
213 |
Q |
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| T |
24686640 |
ttctcattttgtgaaatcagtattggtttttgcaaggtgcctgg-cttggatcgcgtatta |
24686699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 58 - 200
Target Start/End: Original strand, 24675824 - 24675966
Alignment:
| Q |
58 |
tcaagctagtcactgatatcaaatatgaccgagaattttgaattctagggatatatcaaaattttcttagttgcaggacaaaacttcctaatcccttgcc |
157 |
Q |
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|||| ||||||| ||||||| ||||||| |||| ||||| ||| |||||||| || ||||||| |||||||||||||||| |||||| |||||||||| |
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| T |
24675824 |
tcaatctagtcattgatatctaatatgatcgagcattttttatttcagggatatgtcgaaattttgttagttgcaggacaaatcttccttatcccttgcc |
24675923 |
T |
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| Q |
158 |
attttgtgaaatccgtattggttttttcaaggtgcatggactt |
200 |
Q |
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| T |
24675924 |
aatttgtgaaattcatattggtttttacgaggtgcatggactt |
24675966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 182
Target Start/End: Original strand, 24640751 - 24640845
Alignment:
| Q |
88 |
gagaattttgaattctagggatatatcaaaattttcttagttgcaggacaaaacttcctaatcccttgccattttgtgaaatccgtattggtttt |
182 |
Q |
| |
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||||||||| |||| ||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
24640751 |
gagaatttttaatttcagggatatatcaaaattttgttaattgcaggacaaatcttcctaatcccttgccatttcgtgaaatccatattggtttt |
24640845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 63 - 220
Target Start/End: Original strand, 24714101 - 24714257
Alignment:
| Q |
63 |
ctagtcactgatatcaaatatgaccgagaattttgaattctagggatatatcaaaattttcttagttgcaggacaaaacttcctaatcccttgccatttt |
162 |
Q |
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||||||||||||||| ||||||| ||||||||| ||| ||| ||||||| | || || ||||||||| ||||| ||||||||| ||||| |||||| |
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| T |
24714101 |
ctagtcactgatatctaatatgattgagaattttcaatatcaggtatatatcgacatgttgatagttgcagaacaaa-cttcctaattccttgtcatttt |
24714199 |
T |
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| Q |
163 |
gtgaaatccgtattggttttttcaaggtgcatggacttggaccgcgtattattctaat |
220 |
Q |
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|||||||| ||||||||||| |||||| ||||||| | || ||| ||||| |||||| |
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| T |
24714200 |
atgaaatccttattggtttttacaaggtacatggacattgatcgcatattagtctaat |
24714257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 200
Target Start/End: Original strand, 24691938 - 24692075
Alignment:
| Q |
53 |
atcgatcaagctagtcactgatatcaaatatgaccgagaattttgaattctagggatatatcaaaattttcttagttgcaggacaaaacttcctaatccc |
152 |
Q |
| |
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|||| |||| ||||||| |||||| |||||| |||||||||| |||| |||||||||| |||||||| | | |||||||||| |||||| |
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| T |
24691938 |
atcggtcaatctagtcatcgatatctaatatggtcgagaatttttaatttcagggatatattaaaattttgtcaattgcaggaca---------aatccc |
24692028 |
T |
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| Q |
153 |
ttgccattttgtgaaatccgtattggttttttcaaggtgcatggactt |
200 |
Q |
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||||||||| ||||||||| |||||| |||| | |||||||||||||| |
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| T |
24692029 |
ttgccatttcgtgaaatccatattgg-ttttacgaggtgcatggactt |
24692075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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