View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6271_low_7 (Length: 235)
Name: NF6271_low_7
Description: NF6271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6271_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 41823803 - 41824031
Alignment:
| Q |
1 |
cttcacagtttatatagtaaaaagtaacatgcgtac-taagacctaattcaaatgacaaaaatatgtcaaatatattaagtgacaaaaatgtaacaataa |
99 |
Q |
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||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41823803 |
cttcacagtttatatagcaaaaagtaacatgcgtacctaattcctaattcaaatgacaaaaatatgtcaaatatattaagtgacaaaaatgtaacaataa |
41823902 |
T |
|
| Q |
100 |
gaaattacaactaacaagcattatccaaatataaaaag-aaacacaaattaatattgaagcctaaaaaagaaagtaactcgtcaacaaatcctaattcaa |
198 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| || |
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| T |
41823903 |
gaaattacaactaacaagcattatccaaatataaaaggaaaacacaaattaatattgaagcctaaaaaagaaagttactcgtcaacaaatcttaatttaa |
41824002 |
T |
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| Q |
199 |
ctgacaaaaatgttaaaattgtgatgatg |
227 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
41824003 |
ctgacaaaaatgttaaaattgtgatgatg |
41824031 |
T |
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