View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6272_high_1 (Length: 990)
Name: NF6272_high_1
Description: NF6272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6272_high_1 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 1961209 - 1961582
Alignment:
| Q |
18 |
ctttcaattcaaatcgcagcgtctcatagaagtttactagtgctgcctttgcagccttacattaaatgcacataatatatttagagaatcataacccaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1961209 |
ctttcaattcaaatcgcagcgtctcatagaagtttactagtgctgcctttgcagccttacattacatgcacataatatatttagagaatcataacccaat |
1961308 |
T |
|
| Q |
118 |
cagaacagcaaaattaaattaacataaacaccttgcttagtttgaagaaactaaaagcaacattcattaataaaacacagaattaatgtcatgtacttac |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1961309 |
cagaacagcaaaattaaattaacataaacaccttgcttagtttgaagaaactaa--gcaacattcattaataaaacacagaattaatgtcatgtacttac |
1961406 |
T |
|
| Q |
218 |
accaaacaaactcatccttggcaaaggtaaccaactctcaactgatgcattgataataacgcggccattgctttggtgaaggtaaggaagagccaccaac |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1961407 |
accaaacaaactcatccttggcaaaggtaaccaactctcaactgatgcattgataataacacggccattgctttggtgaaggtaaggaagagccaccaaa |
1961506 |
T |
|
| Q |
318 |
gttggataaacattcccccaaaaattaatatcctaaaaagaccacattatctcataataatatgatcaagcaataa |
393 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1961507 |
gttggataaacattcccccaaaaattaatatcctaaaaagaccacattatctcataataatatgatcaagcaataa |
1961582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 391 - 757
Target Start/End: Original strand, 1961604 - 1961948
Alignment:
| Q |
391 |
taattttaaatgaattacggaagcgacgattttgaaattcatgctatatgcaaattgaaattctcaccaagagaacagggaaaactgaggtgtctgtaac |
490 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1961604 |
taattttaaatgaattacggtagcgacgatt--gaaattcatgctatatgcaaattgaaattctcaccaagagaacagggaaaactgaggtgtctgtaac |
1961701 |
T |
|
| Q |
491 |
ttcttcaaagtagaatgtatgtcccaaacttactgtatttacaaggtgatctactgcactcacacaaacaaaattttctttaataatttgaagagtcatg |
590 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1961702 |
ttcttcaaagtagaatgtatgtcccaaacttactgtatttacaaggtgatctactgcactcacacaaacaaaattttctttaataatttgaagagtcatg |
1961801 |
T |
|
| Q |
591 |
gtgatataatttaaatgtgcaatcaaattaaactaataatgtatacaattacagtataaactttagctagaccttagtgcaataagcttaatgtttgaat |
690 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1961802 |
gtgatataatttaaatgtgcaatcaaactaaactaataatgtatacaattacagtataaactttagctagaccttagtgcaataagc------------- |
1961888 |
T |
|
| Q |
691 |
taacagcttaattaatagattacaacttgtgctcttatcatataagtgcctatatataagctatttt |
757 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1961889 |
-------ttaattaatcgattacaacttgtgctcttatcatataagtgcctatatataagctatttt |
1961948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 768 - 978
Target Start/End: Original strand, 1961998 - 1962208
Alignment:
| Q |
768 |
ataagctattccgaacattctcacaagtgtttatatgagtagataaactcaaatatgatgatccaaagaaacataccacgaccaaagacatttatggttt |
867 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1961998 |
ataagctattccgaacattctcacaagtgtttatatgagtagataaactcaaatatgatgatccaaagaaacataccacgaccaaagacatttatggttt |
1962097 |
T |
|
| Q |
868 |
cattaacaaatcttctacaatcatcttccttgacaacatctgctgccataatcataacatgtcttgctcccattctccttgcattctcagcaattcctat |
967 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1962098 |
cattaacaaatcttctacaatcatcttccttgacaacatctgctgccataatcataacatgtcttgctcccattctccttgcattctcagcaattcctat |
1962197 |
T |
|
| Q |
968 |
tagcctatgct |
978 |
Q |
| |
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||||||||||| |
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| T |
1962198 |
tagcctatgct |
1962208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 147; Significance: 5e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 42 - 196
Target Start/End: Complemental strand, 25549016 - 25548862
Alignment:
| Q |
42 |
catagaagtttactagtgctgcctttgcagccttacattaaatgcacataatatatttagagaatcataacccaatcagaacagcaaaattaaattaaca |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25549016 |
catagaagtttactagtgctgcctttgcagccttacattagatgcacataatatatttagagaatcataacccaatcagaacagcaaaattaaattaaca |
25548917 |
T |
|
| Q |
142 |
taaacaccttgcttagtttgaagaaactaaaagcaacattcattaataaaacaca |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25548916 |
taaacaccttgcttagtttgaagaaactaaaagaaacattcattaataaaacaca |
25548862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 147; Significance: 5e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 42 - 196
Target Start/End: Original strand, 22621631 - 22621785
Alignment:
| Q |
42 |
catagaagtttactagtgctgcctttgcagccttacattaaatgcacataatatatttagagaatcataacccaatcagaacagcaaaattaaattaaca |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22621631 |
catagaagtttactagtgctgcctttgcagccttacattagatgcacataatatatttagagaatcataacccaatcagaacagcaaaattaaattaaca |
22621730 |
T |
|
| Q |
142 |
taaacaccttgcttagtttgaagaaactaaaagcaacattcattaataaaacaca |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
22621731 |
taaacaccttgcttagtttgaagaaactaaaagaaacattcattaataaaacaca |
22621785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 5e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 42 - 196
Target Start/End: Original strand, 20011516 - 20011670
Alignment:
| Q |
42 |
catagaagtttactagtgctgcctttgcagccttacattaaatgcacataatatatttagagaatcataacccaatcagaacagcaaaattaaattaaca |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20011516 |
catagaagtttactagtgctgcctttgcagccttacattagatgcacataatatatttagagaatcataacccaatcagaacagcaaaattaaattaaca |
20011615 |
T |
|
| Q |
142 |
taaacaccttgcttagtttgaagaaactaaaagcaacattcattaataaaacaca |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
20011616 |
taaacaccttgcttagtttgaagaaactaaaagaaacattcattaataaaacaca |
20011670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 781 - 834
Target Start/End: Original strand, 54258683 - 54258736
Alignment:
| Q |
781 |
aacattctcacaagtgtttatatgagtagataaactcaaatatgatgatccaaa |
834 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||| ||||| | ||||||||| |
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|
| T |
54258683 |
aacaatctcacaagtgtttatatgagtaaataaactaaaataagttgatccaaa |
54258736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 726 - 756
Target Start/End: Original strand, 4897 - 4927
Alignment:
| Q |
726 |
tatcatataagtgcctatatataagctattt |
756 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
4897 |
tatcatataagtgcctatatataagctattt |
4927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 768 - 822
Target Start/End: Original strand, 41170693 - 41170747
Alignment:
| Q |
768 |
ataagctattccgaacattctcacaagtgtttatatgagtagataaactcaaata |
822 |
Q |
| |
|
||||| |||||| || | |||||||||||||||| | |||||||||||||||||| |
|
|
| T |
41170693 |
ataagttattccaaatagtctcacaagtgtttatgttagtagataaactcaaata |
41170747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 781 - 822
Target Start/End: Original strand, 4661356 - 4661397
Alignment:
| Q |
781 |
aacattctcacaagtgtttatatgagtagataaactcaaata |
822 |
Q |
| |
|
|||| ||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
4661356 |
aacaatcttacaagagtttatatgagtagataaactcaaata |
4661397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 768 - 834
Target Start/End: Complemental strand, 32515428 - 32515362
Alignment:
| Q |
768 |
ataagctattccgaacattctcacaagtgtttatatgagtagataaactcaaatatgatgatccaaa |
834 |
Q |
| |
|
||||||| | || |||| ||||||||||| |||| | |||||||||||||||||||| | ||||||| |
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|
| T |
32515428 |
ataagctctcccaaacagtctcacaagtgcttatgttagtagataaactcaaatatgctaatccaaa |
32515362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 748 - 777
Target Start/End: Original strand, 28844477 - 28844506
Alignment:
| Q |
748 |
aagctattttcatataagctataagctatt |
777 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28844477 |
aagctattttcatataagctataagctatt |
28844506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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