View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6272_high_2 (Length: 711)
Name: NF6272_high_2
Description: NF6272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6272_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 222 - 697
Target Start/End: Complemental strand, 32158724 - 32158249
Alignment:
| Q |
222 |
cgtaagttgtcatgtaaatgatcgttcaaataacacaccttttaaccatatttactcccacaatgttgttcaagaagaaggtacaatcttgggacagaga |
321 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32158724 |
cgtaagttgtcatgcaaatgatcgttcaaataacacaccttttaaccatatttactcccacaatgttgttcaagaagaaggtacaatcttgggacagaga |
32158625 |
T |
|
| Q |
322 |
cgtaacacgacatacaggagaatgtgtgcccatgtccaaaactaccggcaatgttattgccaaactggccacgaggaaacataaagaatctttttaaaat |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32158624 |
cgtaacacgacatacaggagaatgtgtgcccatgtccaaaactaccggcaatgttattgccaaactggccacgaggaaacataaagaatctttttaaaat |
32158525 |
T |
|
| Q |
422 |
catacaagacaaacattactacatcagtgtctgtatatactttggaacatgttggagtaggttgtgttcatattatgaaataaaaactttgagtttgaca |
521 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32158524 |
catacaagacaaacattactacatcagtgtctgtatatactttggaacatgttggagtaggttgtgttcatattatgaaataacaactttgagtttgaca |
32158425 |
T |
|
| Q |
522 |
ttccattttatatagcactaactaacacctgttcatataatatgccaatgtcagagaaaccagtgaaatactatgtggtgagtttattttgtttgaatct |
621 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32158424 |
ttccattttatatagcactaactaacacctgttcatataatatgccaatgtcagagaaaccagtgaaatactatgtggtgagtttattttgtttgaatct |
32158325 |
T |
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| Q |
622 |
gaacttagttattgttgatgaaatatagttaataatgctaatgttattacacaggtggatgcttttactgagttgg |
697 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32158324 |
gaacttagttattgttgatgaaatatagttaataatgctaatgttattacacaggtggatgcttttactgagttgg |
32158249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 32158935 - 32158807
Alignment:
| Q |
11 |
ggagcagagagcttgaggcaaagccagagggtagggcacactactgtactcataagtcaaacaaataaataattcccttgtttaagttaaaaatagagaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32158935 |
ggagcagagagcttgaggcaaagccagagggtagggcacacttctgtactcataagtcaaacaaataaataattcccttgtttaagttaaaagtagagaa |
32158836 |
T |
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| Q |
111 |
ataatatttgtacatttaatttgtgataa |
139 |
Q |
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| T |
32158835 |
ataatatttgtacatttaatctgtgataa |
32158807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 6884901 - 6884943
Alignment:
| Q |
97 |
ttaaaaatagagaaataatatttgtacatttaatttgtgataa |
139 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
6884901 |
ttaaaaatagagaaatgatatttgtacaactaatttgtgataa |
6884943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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