View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6272_high_6 (Length: 412)
Name: NF6272_high_6
Description: NF6272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6272_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 41274923 - 41274523
Alignment:
| Q |
1 |
agcagctgaactagaaacagtcacaactcccataccaagtttgcagaatcagtgtttagaaagaaattcaaatgacagtttctcaatgccaagttcctgc |
100 |
Q |
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| T |
41274923 |
agcagctgaactagaaacagtcacaactcccataccaagtttgccgaatcagtgtttagaaagaaattcaaatgacagtttctcaatgccaagttcctgc |
41274824 |
T |
|
| Q |
101 |
aacagcacaatgccattcaattaccaaataactcaagtacataactattgccattcaatcccttgattaatcattcaatttagcttcaaatattaataac |
200 |
Q |
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| T |
41274823 |
aacagcacaatgccattcaattaccaaataactcaagtacataactattgccattcaatcccttgattaatcattcaatttagcttcaaatattaatacc |
41274724 |
T |
|
| Q |
201 |
aaaacaataatatatggagaacaagttaatatattactttactagctaggcacaaataccattcatgcatcagtaagattcttcaatgttcaaaccccta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41274723 |
aaaacaataatatatggagaacaagttaatatattactttactagctaggcacaaataccattcatgcatcagtaagattcttcaatgttcaaaccccta |
41274624 |
T |
|
| Q |
301 |
tcacatacaattttgtaggagagatcaacaatctccctaaccaaataagaaatttacattttaaattcatagttatctagtatttttataataatattca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41274623 |
tcacatacaattttgtaggagagatcaacaatctccctaaccaaataagaaatttacattttaaattcatagttatctagtatttttataacaatattca |
41274524 |
T |
|
| Q |
401 |
t |
401 |
Q |
| |
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| |
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|
| T |
41274523 |
t |
41274523 |
T |
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