View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6272_high_7 (Length: 395)

Name: NF6272_high_7
Description: NF6272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6272_high_7
NF6272_high_7
[»] chr2 (1 HSPs)
chr2 (21-382)||(27149720-27150081)
[»] chr3 (3 HSPs)
chr3 (222-349)||(5498674-5498801)
chr3 (107-183)||(25338259-25338333)
chr3 (3-46)||(42780564-42780607)
[»] chr4 (2 HSPs)
chr4 (222-303)||(24557833-24557914)
chr4 (250-313)||(37743961-37744023)
[»] chr1 (1 HSPs)
chr1 (286-379)||(12190945-12191042)
[»] chr5 (2 HSPs)
chr5 (107-200)||(2794767-2794858)
chr5 (109-188)||(31571915-31571992)
[»] chr8 (1 HSPs)
chr8 (107-183)||(17633779-17633857)
[»] chr7 (1 HSPs)
chr7 (107-180)||(24730634-24730705)
[»] chr6 (1 HSPs)
chr6 (107-144)||(23903730-23903767)


Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 21 - 382
Target Start/End: Original strand, 27149720 - 27150081
Alignment:
Q  21 ttggacattacatggcctttattgggtaacctgtaaatacaccgcccaaattccttgaggattatatcaaagagcttctcaattaaaatatgcttgaatc 120  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27149720 ttggacattacatggcctttattgggtaacttgtaaatacaccgcccaaattccttgaggattatatcaaagagcttctcaattaaaatatgcttgaatc 27149819  T
Q  121 agatatttgtaattggtttggtgtgtttcatgccctatggctagagatcatgttatcaagctaaacatctcagattcatcatcaaagtggtttcatcacc 220  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27149820 agatatttgtaattggtttggtgtgtttcatgccctgtggctagagatcatgttatcaagctaaacatctcagattcatcatcaaagtggtttcatcacc 27149919  T
Q  221 ttgatgaactaatttcatatgtttacttaaaagattgtgtcacagtttttagaaaactgtagaacatagccaatcaagttaatttattttatgaaatctt 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  27149920 ttgatgaactaatttcatatgtttacttaaaagattgtgtcacagtttttagaaaactgtagaatataaccaatcaagttaatttattttatgaaatctt 27150019  T
Q  321 tgaaccgtttaaagaccatcacatattttcctcgctggtactaaactcaaactttttaggtt 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27150020 tgaaccgtttaaagaccatcacatattttcctcgctggtactaaactcaaactttttaggtt 27150081  T

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Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 222 - 349
Target Start/End: Complemental strand, 5498801 - 5498674
Alignment:
Q  222 tgatgaactaatttcatatgtttacttaaaagattgtgtcacagtttttagaaaactgtagaacatagccaatcaagttaatttattttatgaaatcttt 321  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||| |||||||||||||||||||| ||    
T  5498801 tgatgaactaattccatatgtttacttaaaagattgtgtcacagtttttagaaaactgtagaatataactaatcaaattaatttattttatgaaatcgtt 5498702  T
Q  322 gaaccgtttaaagaccatcacatatttt 349  Q
    |||||||||||||||| |||||||||||    
T  5498701 gaaccgtttaaagaccgtcacatatttt 5498674  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 25338259 - 25338333
Alignment:
Q  107 aatatgcttgaatcagatatttgtaattggtttggtgtgtttcatgccctatggctagagatcatgttatcaagcta 183  Q
    |||||||||||||||||| |||| || |||||||||||  |||||||||||||||| |||||||| | |||||||||    
T  25338259 aatatgcttgaatcagatctttgcaactggtttggtgt--ttcatgccctatggctggagatcatctcatcaagcta 25338333  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 42780607 - 42780564
Alignment:
Q  3 aaaatcattgtggcagaattggacattacatggcctttattggg 46  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||||    
T  42780607 aaaatcactgtggcagaattggacagtacatggactttattggg 42780564  T

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Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 222 - 303
Target Start/End: Original strand, 24557833 - 24557914
Alignment:
Q  222 tgatgaactaatttcatatgtttacttaaaagattgtgtcacagtttttagaaaactgtagaacatagccaatcaagttaat 303  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||    
T  24557833 tgatgaactaattccataagtttacttaaaagattgtgtcacagtttttagaaaactatagaatataaccaatcaagttaat 24557914  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 313
Target Start/End: Original strand, 37743961 - 37744023
Alignment:
Q  250 aaagattgtgtcacagtttttagaaaactgtagaacatagccaatcaagttaatttattttatg 313  Q
    ||||||||||||||| ||||||||||||| || || ||| || |||||||||||||||||||||    
T  37743961 aaagattgtgtcacaatttttagaaaact-taaaaaataaccgatcaagttaatttattttatg 37744023  T

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Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 286 - 379
Target Start/End: Complemental strand, 12191042 - 12190945
Alignment:
Q  286 atagccaatcaagttaatttat----tttatgaaatctttgaaccgtttaaagaccatcacatattttcctcgctggtactaaactcaaactttttag 379  Q
    |||| |||||||||||||||||    ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||    
T  12191042 atagtcaatcaagttaatttatatattttatgaaatcgttgaaccgtttaaagaccataacatattttcctcgatggtactgaactcaaactttttag 12190945  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 107 - 200
Target Start/End: Complemental strand, 2794858 - 2794767
Alignment:
Q  107 aatatgcttgaatcagatatttgtaattggtttggtgtgtttcatgccctatggctagagatcatgttatcaagctaaacatctcagattcatc 200  Q
    |||||||||||||||||| ||||||| ||||||||||| |  ||||| || ||||| |||||||||| |||||| |||||||||||| ||||||    
T  2794858 aatatgcttgaatcagatctttgtaactggtttggtgtat--catgcactctggctggagatcatgtcatcaagttaaacatctcaggttcatc 2794767  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 188
Target Start/End: Complemental strand, 31571992 - 31571915
Alignment:
Q  109 tatgcttgaatcagatatttgtaattggtttggtgtgtttcatgccctatggctagagatcatgttatcaagctaaacat 188  Q
    |||||||||||||||| ||||||  ||| |||||||  ||||| |||||||||||||||| |||| ||||||||||||||    
T  31571992 tatgcttgaatcagatctttgtatctggcttggtgt--ttcattccctatggctagagataatgtcatcaagctaaacat 31571915  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 17633779 - 17633857
Alignment:
Q  107 aatatgcttgaatcagatatttgtaattggtttggtgtgt--ttcatgccctatggctagagatcatgttatcaagcta 183  Q
    |||||||||||||||||| |||| || ||||||||||| |  | |||||||||||||| |||||||||| |||||||||    
T  17633779 aatatgcttgaatcagatctttgcaactggtttggtgtttcatgcatgccctatggctggagatcatgtcatcaagcta 17633857  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 24730634 - 24730705
Alignment:
Q  107 aatatgcttgaatcagatatttgtaattggtttggtgtgtttcatgccctatggctagagatcatgttatcaag 180  Q
    ||||||||||||||| || ||||||| |||||||  |||||||||||| |||| ||| ||||||||| ||||||    
T  24730634 aatatgcttgaatcaaatctttgtaactggtttg--gtgtttcatgccttatgtctatagatcatgtcatcaag 24730705  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 23903730 - 23903767
Alignment:
Q  107 aatatgcttgaatcagatatttgtaattggtttggtgt 144  Q
    |||||||||||||||||| ||||||| |||||||||||    
T  23903730 aatatgcttgaatcagatctttgtaactggtttggtgt 23903767  T

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