View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6272_high_9 (Length: 300)
Name: NF6272_high_9
Description: NF6272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6272_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 14 - 283
Target Start/End: Complemental strand, 35374805 - 35374536
Alignment:
| Q |
14 |
agagggagtgtaccaatgtcattattgtcttcaaactcatccaagcaaataacacaatcacgtagagattcttcgtttgcatacttagcagtgtagacag |
113 |
Q |
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| T |
35374805 |
agagggagtgtaccaatgtcattattgtcttcaaactcatccaagcaaataacacaatcacgtagagattcttcgtttgcatacttagcagtgtagacag |
35374706 |
T |
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| Q |
114 |
agaaggggatggtgtttatgaccaactcgtctaagttgtggacgacatgtgtttgcaattggtcgttagaatagtgacatgaggtattcgtatcttcgtg |
213 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35374705 |
agaaggggatggtgtttctgaccaactcgtctaagttgtggacgacatgtgtttgcaattggtcgttagaatagtgacgtgaggtattcgtatcttcgtg |
35374606 |
T |
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| Q |
214 |
ccttatcagcattgtttgaaggcgagttagaatccagtggataagtagtacgagaaacagcagaaccaat |
283 |
Q |
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| T |
35374605 |
ccttatcagcattgtttgaaggctagttagaatccagtggataagtagtacgagaaacagcagaaccaat |
35374536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 35381059 - 35380949
Alignment:
| Q |
14 |
agagggagtgtaccaatgtcattattgtcttcaaactcatccaagcaaataacacaatcacgtagagattcttcgtttgcatacttagcagtgtagacag |
113 |
Q |
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|||||||| || |||||| || |||||||||||| |||| |||||||||||||||||||||| || ||||||| | |||||| ||||| ||||||| | |
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| T |
35381059 |
agagggagcgttccaatggtatcattgtcttcaaattcattcaagcaaataacacaatcacgttgaaattcttcttgtgcatatttagcgttgtagacgg |
35380960 |
T |
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| Q |
114 |
agaaggggatg |
124 |
Q |
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| T |
35380959 |
aggagaggatg |
35380949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 59 - 182
Target Start/End: Complemental strand, 30811986 - 30811863
Alignment:
| Q |
59 |
caaataacacaatcacgtagagattcttcgtttgcatacttagcagtgtagacagagaaggggatggtgtttatgaccaactcgtctaagttgtggacga |
158 |
Q |
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||||||||||| | |||| | || |||| |||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||||||| || |||| |
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| T |
30811986 |
caaataacacagtaacgtgcaaatgcttcttttgcatacttagcggtgtagatggagaaggagatggtatttatgaccaactcgtctaagttatgaacga |
30811887 |
T |
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| Q |
159 |
catgtgtttgcaattggtcgttag |
182 |
Q |
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|||||||||||| ||||||||||| |
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| T |
30811886 |
catgtgtttgcagttggtcgttag |
30811863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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