View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6272_low_12 (Length: 274)
Name: NF6272_low_12
Description: NF6272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6272_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 262
Target Start/End: Original strand, 46872827 - 46873080
Alignment:
| Q |
9 |
gaagaatatttggagtgctgaagaggttcaaacaatgggtggtgaagaagctattagtaatcatttgcaaagacaaggttcgttgacgctgccgcgaact |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46872827 |
gaagaatatttggagtgctgaagaggttcaaacaatgggtggtgaagaagctattagtaatcatttgcaaagacaaggttcgttgacgctgccgcgaact |
46872926 |
T |
|
| Q |
109 |
cttagtcagaaaacggttgatgaggtttggaaggatatttctaaggattatggtggtcctaatttggctgcaccaatgactcagagacaaccaactttgg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46872927 |
cttagtcagaaaacggttgatgaggtttggaaggatatttctaaggattatggtggtcctaatttggctgcaccaatgactcagagacaaccaactttgg |
46873026 |
T |
|
| Q |
209 |
gggagatgactttggaagagtttttggttagagctggtgttgttagagatgatg |
262 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
46873027 |
gggagatgactttggaagaatttttggttagagctggtgttgttagagaagatg |
46873080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 33598958 - 33598895
Alignment:
| Q |
188 |
ctcagagacaaccaactttgggggagatgactttggaagagtttttggttagagctggtgttgt |
251 |
Q |
| |
|
|||| ||||||||||| || || || |||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
33598958 |
ctcaaagacaaccaacattaggtgaagtgactttggaggagtttttggtgagagctggtgttgt |
33598895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University