View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6272_low_15 (Length: 213)
Name: NF6272_low_15
Description: NF6272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6272_low_15 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 108 - 213
Target Start/End: Original strand, 41274281 - 41274386
Alignment:
| Q |
108 |
gtgaatagagaaaaatggtagcttaattcaattgtgttgtttgtgaaaattgtaatttgaaataagcaattgatagtagaagatatcaaatcaattaatt |
207 |
Q |
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| T |
41274281 |
gtgaatagagaaaaatggtagcttaattcaatggtgttgtttgtgaaacttgtaatttgaaataagcaattgatagtagaagatatcaaatcaataaatt |
41274380 |
T |
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| Q |
208 |
attgag |
213 |
Q |
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|||||| |
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| T |
41274381 |
attgag |
41274386 |
T |
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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 41274178 - 41274218
Alignment:
| Q |
5 |
aggtacaattctatttttcattgtttttctttcaatatgtg |
45 |
Q |
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| T |
41274178 |
aggtacaattctatttttcattgtttttctttcaatatgtg |
41274218 |
T |
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