View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6272_low_4 (Length: 553)
Name: NF6272_low_4
Description: NF6272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6272_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 2 - 365
Target Start/End: Complemental strand, 4064878 - 4064520
Alignment:
| Q |
2 |
gggtcaggttgaggttatccttgaagaattgtggataatttactaaacaatcaataagaatcaacgcatgattagatatgtcaatggtatacacaaatta |
101 |
Q |
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| T |
4064878 |
gggtcaggtcgaggttatccttgaagaatcgtggataatttactaaacaatcgataaatatcaatgcatgattatatttgtcagtggtacacacaaatta |
4064779 |
T |
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| Q |
102 |
atttttactccacttgattaaatttgtcaaaagcgattgatttttattaattattgattaaatcacccgcgattcttt-------aagggtaagagaaat |
194 |
Q |
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| T |
4064778 |
atttttaccccacttac--aaatttgattat-gcgattgatt----------atttattaaatcacactcgattctttgaggattaaggataagagaaat |
4064692 |
T |
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| Q |
195 |
accttattttaattgttgatgcatttgatttgtttttgctttttgggttattaaattaaaggataatagtattagtagtcatgaatcaagtctcaaaagt |
294 |
Q |
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| T |
4064691 |
tccttattttaattgttgatgcatttgatttgtttttgctttttgggttattaaattaaaggataatagtattagtagtcatgaatcaagtcacaaaagt |
4064592 |
T |
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| Q |
295 |
gttaacttttgacaattatttcttactcta-nnnnnnncttaattctaatgagtatggaagatgtggatcta |
365 |
Q |
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| T |
4064591 |
gttaacttttgacaattatttcttactctattttttttcttaattctaatgagtatggaagatgtggatcta |
4064520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 365 - 550
Target Start/End: Original strand, 45479241 - 45479426
Alignment:
| Q |
365 |
aattatgtgtagaatatgattgactattttgaaagattaataatactttagggtgttttcagatggacctctgaaaaacagtatgaaggcgtgtacttac |
464 |
Q |
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| T |
45479241 |
aattatgtgtagaatatgattgactattttgaaagattaataatacttcagggtgttttcagatggacctctgaaaaacagtatgaaggcgtgtatttac |
45479340 |
T |
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| Q |
465 |
catttatagtaaaaatgaaaattatcatgataaaaactggagaattgaaataatatgttttaaaacttaccgaaaatagtatgatc |
550 |
Q |
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| T |
45479341 |
catttatagtaaaaatgaaaattatcatgataaaaattggagaactgaaataatattttttaaaacttaccaaaaatagtatgatc |
45479426 |
T |
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