View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6272_low_5 (Length: 459)
Name: NF6272_low_5
Description: NF6272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6272_low_5 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 15 - 450
Target Start/End: Original strand, 281071 - 281506
Alignment:
| Q |
15 |
atatatatggtttttggtttaaggagtgaaatggaggaagctgaatggcagatggtgcaaaagaaaggaaaccaatttgtagtgaatgaccaacctttct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
281071 |
atatatatggtttttggtttaaggagtgaaatggaggaagctgaatggcagatggtgcaaaagaaaggaaaccaatttgtagtgaatgaccaacctttct |
281170 |
T |
|
| Q |
115 |
atgtaaatggattcaacacttattggttgatggtatttgctgcggatgagtcgacaagaggaagggtcactcaggtgttcaaacatgcatcctcagttgg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
281171 |
atgtaaatggattcaacacttattggttgatggtatttgctgcggacgagtcgacaagaggaagggtcactcaggtgttcaaacatgcatcctcagttgg |
281270 |
T |
|
| Q |
215 |
catgacagtttgtaggacttgggcgtttaatgatggccaatggagagcccttcagaaatctccatcactttatgatgaagtagtattcaaagccctggat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
281271 |
catgacagtttgtaggacttgggcgtttaatgatggccaatggagagcccttcagaaatctccatcactttatgatgaagtagtattcaaagccctggat |
281370 |
T |
|
| Q |
315 |
tttgtggtgagtgaagcaaagaaatacagaatcagactcatattatcattggttaacaattgggagacatatggtggaaaagcacaatatgtcaagtggg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
281371 |
tttgtggtgagtgaagcaaagaaatacagaatcagactcatattatcattggttaacaattgggaggcatatggtggaaaagcacaatatgtcaagtggg |
281470 |
T |
|
| Q |
415 |
gtaatgctgctggccttaacttgacctctgatgatg |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
281471 |
gtaatgctgctggccttaacttgacctctgatgatg |
281506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 15 - 450
Target Start/End: Complemental strand, 634781 - 634346
Alignment:
| Q |
15 |
atatatatggtttttggtttaaggagtgaaatggaggaagctgaatggcagatggtgcaaaagaaaggaaaccaatttgtagtgaatgaccaacctttct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
634781 |
atatatatggtttttggtttaaggagtgaaatggaggaagctgaatggcagatggtgcaaaagaaaggaaaccaatttgtagtgaatgaccaacctttct |
634682 |
T |
|
| Q |
115 |
atgtaaatggattcaacacttattggttgatggtatttgctgcggatgagtcgacaagaggaagggtcactcaggtgttcaaacatgcatcctcagttgg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
634681 |
atgtaaatggattcaacacttattggttgatggtatttgctgcggacgagtcgacaagaggaagggtcactcaggtgttcaaacatgcatcctcagttgg |
634582 |
T |
|
| Q |
215 |
catgacagtttgtaggacttgggcgtttaatgatggccaatggagagcccttcagaaatctccatcactttatgatgaagtagtattcaaagccctggat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
634581 |
catgacagtttgtaggacttgggcgtttaatgatggccaatggagagcccttcagaaatctccatcactttatgatgaagtagtattcaaagccctggat |
634482 |
T |
|
| Q |
315 |
tttgtggtgagtgaagcaaagaaatacagaatcagactcatattatcattggttaacaattgggagacatatggtggaaaagcacaatatgtcaagtggg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
634481 |
tttgtggtgagtgaagcaaagaaatacagaatcagactcatattatcattggttaacaattgggaggcatatggtggaaaagcacaatatgtcaagtggg |
634382 |
T |
|
| Q |
415 |
gtaatgctgctggccttaacttgacctctgatgatg |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
634381 |
gtaatgctgctggccttaacttgacctctgatgatg |
634346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 15 - 450
Target Start/End: Complemental strand, 820584 - 820149
Alignment:
| Q |
15 |
atatatatggtttttggtttaaggagtgaaatggaggaagctgaatggcagatggtgcaaaagaaaggaaaccaatttgtagtgaatgaccaacctttct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
820584 |
atatatatggtttttggtttaaggagtgaaatggaggaagctgaatggcagatggtgcaaaagaaaggaaaccaatttgtagtgaatgaccaacctttct |
820485 |
T |
|
| Q |
115 |
atgtaaatggattcaacacttattggttgatggtatttgctgcggatgagtcgacaagaggaagggtcactcaggtgttcaaacatgcatcctcagttgg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
820484 |
atgtaaatggattcaacacttattggttgatggtatttgctgcggacgagtcgacaagaggaagggtcactcaggtgttcaaacatgcatcctcagttgg |
820385 |
T |
|
| Q |
215 |
catgacagtttgtaggacttgggcgtttaatgatggccaatggagagcccttcagaaatctccatcactttatgatgaagtagtattcaaagccctggat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
820384 |
catgacagtttgtaggacttgggcgtttaatgatggccaatggagagcccttcagaaatctccatcactttatgatgaagtagtattcaaagccctggat |
820285 |
T |
|
| Q |
315 |
tttgtggtgagtgaagcaaagaaatacagaatcagactcatattatcattggttaacaattgggagacatatggtggaaaagcacaatatgtcaagtggg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
820284 |
tttgtggtgagtgaagcaaagaaatacagaatcagactcatattatcattggttaacaattgggaggcatatggtggaaaagcacaatatgtcaagtggg |
820185 |
T |
|
| Q |
415 |
gtaatgctgctggccttaacttgacctctgatgatg |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
820184 |
gtaatgctgctggccttaacttgacctctgatgatg |
820149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 3e-43; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 75 - 304
Target Start/End: Complemental strand, 27498832 - 27498603
Alignment:
| Q |
75 |
aagaaaggaaaccaatttgtagtgaatgaccaacctttctatgtaaatggattcaacacttattggttgatggtatttgctgcggatgagtcgacaagag |
174 |
Q |
| |
|
|||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||| || ||||| ||| | |||||||| ||||| || || |||| |
|
|
| T |
27498832 |
aagaaaggaaaccaatttgtggtgaatggtcagcctttctatataaatggattcaacacatactggttaatgatgtttgctgcagatgactccaccagag |
27498733 |
T |
|
| Q |
175 |
gaagggtcactcaggtgttcaaacatgcatcctcagttggcatgacagtttgtaggacttgggcgtttaatgatggccaatggagagcccttcagaaatc |
274 |
Q |
| |
|
||| |||||| |||| |||||||| ||||||||| | || ||||||||||||||||||||||| || ||||||||||||||| | ||||| || ||||| |
|
|
| T |
27498732 |
gaaaagtcactgaggttttcaaacaagcatcctcactaggtatgacagtttgtaggacttgggctttcaatgatggccaatggcgggccctacaaaaatc |
27498633 |
T |
|
| Q |
275 |
tccatcactttatgatgaagtagtattcaa |
304 |
Q |
| |
|
|| || ||||||| |||| ||| ||||| |
|
|
| T |
27498632 |
cccttcggtttatgacgaagaagtcttcaa |
27498603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 310 - 450
Target Start/End: Complemental strand, 27498430 - 27498290
Alignment:
| Q |
310 |
tggattttgtggtgagtgaagcaaagaaatacagaatcagactcatattatcattggttaacaattgggagacatatggtggaaaagcacaatatgtcaa |
409 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| |||||| || ||||||||||||| |||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
27498430 |
tggactttgtggtaagtgaagcaaagaaatacaaaatcaggctgatattatcattggccaacaattgggaggcatatggtggaaaagcacaatatgtgaa |
27498331 |
T |
|
| Q |
410 |
gtggggtaatgctgctggccttaacttgacctctgatgatg |
450 |
Q |
| |
|
||||| || | ||||||||||||||||||||||||||||| |
|
|
| T |
27498330 |
atggggcaaagatgctggccttaacttgacctctgatgatg |
27498290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 310 - 450
Target Start/End: Complemental strand, 27519902 - 27519762
Alignment:
| Q |
310 |
tggattttgtggtgagtgaagcaaagaaatacagaatcagactcatattatcattggttaacaattgggagacatatggtggaaaagcacaatatgtcaa |
409 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| |||||| || ||||||||||||| |||||||||||| |||||||||||||| |||||||||| || |
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|
| T |
27519902 |
tggactttgtggtaagtgaagcaaagaaatacaaaatcaggctgatattatcattggccaacaattgggagtcatatggtggaaaatcacaatatgtgaa |
27519803 |
T |
|
| Q |
410 |
gtggggtaatgctgctggccttaacttgacctctgatgatg |
450 |
Q |
| |
|
||||| || | ||||||||||||||||||||||||||||| |
|
|
| T |
27519802 |
atggggcaaagatgctggccttaacttgacctctgatgatg |
27519762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 75 - 254
Target Start/End: Complemental strand, 27520267 - 27520088
Alignment:
| Q |
75 |
aagaaaggaaaccaatttgtagtgaatgaccaacctttctatgtaaatggattcaacacttattggttgatggtatttgctgcggatgagtcgacaagag |
174 |
Q |
| |
|
|||||||||||||||||||| |||||| || ||||||||| |||||||||||||| | |||||||||||| | ||||| || ||||| || || ||| |
|
|
| T |
27520267 |
aagaaaggaaaccaatttgtggtgaatagtcagcctttctatataaatggattcaacgcatattggttgatgatgtttgcggcagatgactccaccagac |
27520168 |
T |
|
| Q |
175 |
gaagggtcactcaggtgttcaaacatgcatcctcagttggcatgacagtttgtaggacttgggcgtttaatgatggccaa |
254 |
Q |
| |
|
||| ||||| |||| |||||||| ||| ||||| | || |||||||||||||| |||||||| || | |||||||||| |
|
|
| T |
27520167 |
gaaaagtcaccgaggttttcaaacaagcaacctcactaggtatgacagtttgtagaacttgggctttcactgatggccaa |
27520088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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