View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6272_low_6 (Length: 439)
Name: NF6272_low_6
Description: NF6272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6272_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 53 - 270
Target Start/End: Original strand, 4065061 - 4065278
Alignment:
| Q |
53 |
tcatttaccttgaccatgttgttgaccctcagattctgaagtaccagaagaagaaccaattgaaccaccaccaccttgtggtgaaggaggaacaacttga |
152 |
Q |
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| T |
4065061 |
tcatttaccttgaccatgttgttgaccctcagattctgaagtacccgaagaagaaccaattgaaccaccaccaccttgtggtgaaggaggaacaacttga |
4065160 |
T |
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| Q |
153 |
tccaattccttttcaccattcaaaccaagtccaccaacacgagtagttaaagaactagttcttatcaaactttcaccaccaacaccttgcacaaaaacct |
252 |
Q |
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| T |
4065161 |
tccaattccttttcaccattcaaaccaagtccaccaacacgagtagttaaagaactagttcttatcaaactttcaccaccaacaccttgcacaaaaacct |
4065260 |
T |
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| Q |
253 |
ccactagattattactat |
270 |
Q |
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|||||||||||||||||| |
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| T |
4065261 |
ccactagattattactat |
4065278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 327 - 424
Target Start/End: Original strand, 4065329 - 4065426
Alignment:
| Q |
327 |
aaacttctttctctcatagccctagaatttctctgcttctcatatctctttttcctagcttccatcctcctttgtgattgtaattccttcctctttct |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4065329 |
aaacttctttctctcatagccctagaatttctctgcttctcatatctctttttcctagcttccatcctcctttgtgattgtaattccttcctctttct |
4065426 |
T |
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