View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6272_low_7 (Length: 429)

Name: NF6272_low_7
Description: NF6272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6272_low_7
NF6272_low_7
[»] chr2 (15 HSPs)
chr2 (3-413)||(15004291-15004701)
chr2 (80-403)||(14546710-14547033)
chr2 (112-413)||(14519753-14520060)
chr2 (103-399)||(14533585-14533890)
chr2 (112-413)||(14528351-14528670)
chr2 (112-413)||(14542577-14542896)
chr2 (265-402)||(31968921-31969058)
chr2 (265-403)||(15013004-15013142)
chr2 (253-413)||(14512060-14512220)
chr2 (109-413)||(15007426-15007742)
chr2 (265-383)||(15019496-15019614)
chr2 (174-252)||(14511951-14512029)
chr2 (121-193)||(31968774-31968846)
chr2 (121-193)||(15012857-15012929)
chr2 (121-193)||(15019349-15019421)
[»] chr4 (1 HSPs)
chr4 (86-252)||(17357339-17357490)


Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 3 - 413
Target Start/End: Complemental strand, 15004701 - 15004291
Alignment:
Q  3 cacagacagtccgtttctcgcagttcccggaacacaatcatagtaatcatttgctccaaaaacccctcacattagtaactctaaaacctttgactaaatt 102  Q
    |||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15004701 cacacacagtccgtttctcacagttcacggaacacaatcatagtaatcatttgctccaaaaacccctcacattagtaactctaaaacctttgactaaatt 15004602  T
Q  103 ttccaaacaatgttgaagaaatggtttctctcccacaatgctgttttaggtatcatcaccacaaaatcaacaaccccaaaattcaacaaccctcttctgc 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15004601 ttccaaacaatgttgaagaaatggtttctctcccacaatgctgttttaggtatcatcaccacaaaatcaacaaccccaaaattcaacaaccctcttctgc 15004502  T
Q  203 atcaatacttctcgttcccaatttcactcacaagattctgcaccacaacaacacacccattcgctgtatcataccttgtcaacaattttggtttctcaac 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15004501 atcaatacttctcgttcccaatttcactcacaagattctgcaccacaacaacacacccattcgctgtatcataccttgtcaacaattttggtttctcaac 15004402  T
Q  303 tgaatcagctctcaaagctttcaacaacaagcaggttcgtttcaataccccagataatcctgattctgttatcaccttctttcaaaatcatggtttttca 402  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15004401 tgaatcaactctcaaagctttcaacaacaagcaggttcgtttcaataccccagataatcctgattctgttatcaccttctttcaaaatcatggtttttca 15004302  T
Q  403 ctcgataacat 413  Q
    |||||||||||    
T  15004301 ctcgataacat 15004291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 80 - 403
Target Start/End: Original strand, 14546710 - 14547033
Alignment:
Q  80 actctaaaacctttgactaaattttccaaacaatgttgaagaaatggtttctctcccacaatgctgttttaggtatcatcaccacaaaatcaacaacccc 179  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||| |||||| ||||| |||| || |||||| ||||||||||||||||||||||||||    
T  14546710 actcttaaacctttgactaaattttccaaaccatgttgaagaaattgtttctttcccagaatgttgctttaggcatcatcaccacaaaatcaacaacccc 14546809  T
Q  180 aaaattcaacaaccctcttctgcatcaatacttctcgttcccaatttcactcacaagattctgcaccacaacaacacacccattcgctgtatcatacctt 279  Q
    ||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14546810 aaaattcaataactctcttctgcaccaatacttctcgttcccaatttcactcacaagattctgcaccacaacaacacacccattcgctgtatcatacctt 14546909  T
Q  280 gtcaacaattttggtttctcaactgaatcagctctcaaagctttcaacaacaagcaggttcgtttcaataccccagataatcctgattctgttatcacct 379  Q
     |||||||||| ||||||||| ||  ||| |||||||| |||||||||||||| ||||||| ||||||  || |||| |||||| |||| |||||||  |    
T  14546910 atcaacaatttcggtttctcacctctatctgctctcaaggctttcaacaacaatcaggttcttttcaaatccgcagaaaatcctaattcagttatcaatt 14547009  T
Q  380 tctttcaaaatcatggtttttcac 403  Q
    ||||  |||||| || ||||||||    
T  14547010 tcttcaaaaatcgtgatttttcac 14547033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 112 - 413
Target Start/End: Original strand, 14519753 - 14520060
Alignment:
Q  112 atgttgaagaaatggtttctctcccacaatgctgttttaggtatcatcaccacaaaatcaacaaccccaaaattcaacaaccctcttctgcatcaatact 211  Q
    ||||||||||||  |||||| ||||| |||| ||||||| || ||||||| |||||||||||||||||||||||||||||||||||| |  | ||| |||    
T  14519753 atgttgaagaaactgtttctttcccagaatgttgttttatgtctcatcacaacaaaatcaacaaccccaaaattcaacaaccctcttttcaaccaacact 14519852  T
Q  212 tctcgttcccaatttcactcacaagattctgcaccac---aaca---acacacccattcgctgtatcataccttgtcaacaattttggtttctcaactga 305  Q
    | | ||||||||||||||||| ||| ||||||||  |   | ||   ||||| ||||| |||||||||||||| |||||||| ||||||||||||  |||    
T  14519853 tgttgttcccaatttcactcagaagcttctgcacatcggaatcagacacacaaccatttgctgtatcatacctcgtcaacaaatttggtttctcacatga 14519952  T
Q  306 atcagctctcaaagctttcaacaacaagcaggttcgtttcaataccccagataatcctgattctgttatcaccttctttcaaaatcatggtttttcactc 405  Q
    ||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |    
T  14519953 atcggctctcaaagctttcaacaacagacaggttcgtttcaataccccagataatcctgattctgttatcaccttctttcaaaaccatggcttttcacac 14520052  T
Q  406 gataacat 413  Q
    ||||||||    
T  14520053 gataacat 14520060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 103 - 399
Target Start/End: Original strand, 14533585 - 14533890
Alignment:
Q  103 ttccaaacaatgttgaagaaatggtttctctcccacaatgctgttttaggtatcatcaccacaaaatcaacaaccccaaaattcaacaaccctcttctgc 202  Q
    |||| ||| |||||||||||||||||||| ||| |||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||| |||    
T  14533585 ttccgaaccatgttgaagaaatggtttctttccaacaatgctgttttatgtttcatcacaacaaaatcaacaaccccaaaattcaacaaccctcttttgc 14533684  T
Q  203 atcaatacttctcgttcccaatttcactcacaagattctgcaccacaaca------------------acacacccattcgctgtatcataccttgtcaa 284  Q
    | ||||         |||||||||||| || | | |||||||||| ||||                  ||||| |||||| |||||||||||||  ||||    
T  14533685 accaat---------tcccaatttcacccagacgtttctgcaccataacagccacttcagaatcaaacacacatccattctctgtatcatacctcatcaa 14533775  T
Q  285 caattttggtttctcaactgaatcagctctcaaagctttcaacaacaagcaggttcgtttcaataccccagataatcctgattctgttatcaccttcttt 384  Q
    ||||||||| ||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14533776 caattttggattctcacatgaatctgctctcaaagctttcaacaacaagcaggttcgtttcaataccccagataatgctgattctgttatcaccttcttt 14533875  T
Q  385 caaaatcatggtttt 399  Q
    ||||| |||||||||    
T  14533876 caaaaccatggtttt 14533890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 112 - 413
Target Start/End: Original strand, 14528351 - 14528670
Alignment:
Q  112 atgttgaagaaatggtttctctcccacaatgctgttttaggtatcatcaccacaaaatcaacaaccccaaaattcaacaaccctcttctgcatcaatact 211  Q
    |||||||| ||||||||||||||||| |||| |||||||||| ||||||| |||||| |||||||| |||||||||||||||||||| |  | ||| |||    
T  14528351 atgttgaacaaatggtttctctcccagaatgttgttttaggtctcatcacaacaaaaacaacaacctcaaaattcaacaaccctcttttcaaccaacact 14528450  T
Q  212 tctcgttcccaatttcactcacaagattctgcaccacaaca------------------acacacccattcgctgtatcataccttgtcaacaattttgg 293  Q
    |||| |||||| |||||||||||||||||||||||||||||                  ||||| |||||||||| ||| || ||  |||||||||||||    
T  14528451 tctcattcccattttcactcacaagattctgcaccacaacatctcaatctgaatcagtcacacatccattcgctgcatcttatctcatcaacaattttgg 14528550  T
Q  294 tttctcaactgaatcagctctcaaagctttcaacaacaagcaggttcgtttcaataccccagataatcctgattctgttatcaccttctttcaaaatcat 393  Q
     ||||||  |||||| ||||||||||||||||||  |||||| ||||||||||||||| ||||||| |||||||| || |||||||||||||||||||||    
T  14528551 gttctcacatgaatctgctctcaaagctttcaacctcaagcaagttcgtttcaataccgcagataaacctgattcagtcatcaccttctttcaaaatcat 14528650  T
Q  394 ggtttttcactcgataacat 413  Q
    || ||||||| ||| |||||    
T  14528651 ggcttttcacacgacaacat 14528670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 112 - 413
Target Start/End: Original strand, 14542577 - 14542896
Alignment:
Q  112 atgttgaagaaatggtttctctcccacaatgctgttttaggtatcatcaccacaaaatcaacaaccccaaaattcaacaaccctcttctgcatcaatact 211  Q
    |||||||| ||||||||||||||||| |||| |||||||||| ||| ||| |||||| |||||||| |||||||||||||||||||| |  | ||| |||    
T  14542577 atgttgaacaaatggtttctctcccagaatgttgttttaggtctcaacacaacaaaaacaacaacctcaaaattcaacaaccctcttttcaaccaacact 14542676  T
Q  212 tctcgttcccaatttcactcacaagattctgcaccacaaca------------------acacacccattcgctgtatcataccttgtcaacaattttgg 293  Q
    |||| |||| |||||||||||||||||||||||||||||||                  ||||| |||||||||| ||| || ||  |||||||||||||    
T  14542677 tctcattccaaatttcactcacaagattctgcaccacaacatctcaatctgaatcagtcacacatccattcgctgcatcttatctcatcaacaattttgg 14542776  T
Q  294 tttctcaactgaatcagctctcaaagctttcaacaacaagcaggttcgtttcaataccccagataatcctgattctgttatcaccttctttcaaaatcat 393  Q
     ||||||  |||||| ||||||||||||||||||  |||||| ||||||||||||||| ||||||| |||||||| || |||||||||||||||||||||    
T  14542777 gttctcacatgaatctgctctcaaagctttcaacctcaagcaagttcgtttcaataccgcagataaacctgattcagtcatcaccttctttcaaaatcat 14542876  T
Q  394 ggtttttcactcgataacat 413  Q
    || ||||||| ||| |||||    
T  14542877 ggcttttcacacgacaacat 14542896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 265 - 402
Target Start/End: Original strand, 31968921 - 31969058
Alignment:
Q  265 gctgtatcataccttgtcaacaattttggtttctcaactgaatcagctctcaaagctttcaacaacaagcaggttcgtttcaataccccagataatcctg 364  Q
    |||||||| || ||| |||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||    
T  31968921 gctgtatcttatcttatcaacaattttgatttctcaactgaatcagctctcaaagctttcaacctcaagcaggttcgtttcaatacctcagataatcctg 31969020  T
Q  365 attctgttatcaccttctttcaaaatcatggtttttca 402  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  31969021 attctgttatcaccttctttcaaaaccatggtttttca 31969058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 265 - 403
Target Start/End: Original strand, 15013004 - 15013142
Alignment:
Q  265 gctgtatcataccttgtcaacaattttggtttctcaactgaatcagctctcaaagctttcaacaacaagcaggttcgtttcaataccccagataatcctg 364  Q
    |||||||| || ||| |||||||||||| ||||||||||||||||||||||||||||||||||  || ||| ||||||||||||||||||||||||||||    
T  15013004 gctgtatcttatcttatcaacaattttgatttctcaactgaatcagctctcaaagctttcaacctcaggcaagttcgtttcaataccccagataatcctg 15013103  T
Q  365 attctgttatcaccttctttcaaaatcatggtttttcac 403  Q
    | || || |||| |||||||||||| |||||||||||||    
T  15013104 actcagtcatcaacttctttcaaaaccatggtttttcac 15013142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 253 - 413
Target Start/End: Original strand, 14512060 - 14512220
Alignment:
Q  253 acacacccattcgctgtatcataccttgtcaacaattttggtttctcaactgaatcagctctcaaagctttcaacaacaagcaggttcgtttcaataccc 352  Q
    ||||| |||||||||| ||| || ||  ||||||||||||||||| ||  |||||||||||||||| |||||||| ||||||| |||||||||||||||     
T  14512060 acacatccattcgctgcatcttatctcatcaacaattttggtttcacacatgaatcagctctcaaatctttcaactacaagcatgttcgtttcaataccg 14512159  T
Q  353 cagataatcctgattctgttatcaccttctttcaaaatcatggtttttcactcgataacat 413  Q
    ||||||| |||||||| || ||||||||||||||||||||||| ||||||| ||| |||||    
T  14512160 cagataaacctgattcagtcatcaccttctttcaaaatcatggcttttcacacgacaacat 14512220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 109 - 413
Target Start/End: Original strand, 15007426 - 15007742
Alignment:
Q  109 acaatgttgaagaaatggtttctctcccacaatgctgttttaggtatcatcaccacaaaatcaacaaccccaaaa-ttcaacaaccctcttctgcatcaa 207  Q
    |||||||||||||||| |||| |||||||||||| | ||||||  |||| | | ||||||||||||||||||||| || | ||    |||| |   ||||    
T  15007426 acaatgttgaagaaattgtttatctcccacaatgttattttagaaatcaacgcaacaaaatcaacaaccccaaaaattgatca----tctttt---tcaa 15007518  T
Q  208 tacttctcgttcccaatttcactcacaagattctgcaccacaacaaca------------------cacccattcgctgtatcataccttgtcaacaatt 289  Q
     ||||||| |||||||||||||||||||||||| ||||||||||| ||                  ||||||||||||| ||| |||||  || ||||||    
T  15007519 cacttctcattcccaatttcactcacaagattcagcaccacaacatcaacatcagaatccaacactcacccattcgctgcatcctacctcatcgacaatt 15007618  T
Q  290 ttggtttctcaactgaatcagctctcaaagctttcaacaacaagcaggttcgtttcaataccccagataatcctgattctgttatcaccttctttcaaaa 389  Q
    ||||||||||| || |||| ||||| ||||||||||||||||| |||||||||||||||||||  || || ||| |||| ||| ||||||||||||||||    
T  15007619 ttggtttctcacctcaatctgctcttaaagctttcaacaacaaacaggttcgtttcaatacccttgaaaagcctaattcagttctcaccttctttcaaaa 15007718  T
Q  390 tcatggtttttcactcgataacat 413  Q
    |||||| ||||||| ||| |||||    
T  15007719 tcatggcttttcacacgaaaacat 15007742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 265 - 383
Target Start/End: Original strand, 15019496 - 15019614
Alignment:
Q  265 gctgtatcataccttgtcaacaattttggtttctcaactgaatcagctctcaaagctttcaacaacaagcaggttcgtttcaataccccagataatcctg 364  Q
    |||||||| || ||| |||||||||||| ||||||||||||||||||||||||||||||||||  || ||| ||||||||||||||||||||||  ||||    
T  15019496 gctgtatcttatcttatcaacaattttgatttctcaactgaatcagctctcaaagctttcaacctcaggcacgttcgtttcaataccccagataggcctg 15019595  T
Q  365 attctgttatcaccttctt 383  Q
    | || || |||| ||||||    
T  15019596 actcagtcatcaacttctt 15019614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 174 - 252
Target Start/End: Original strand, 14511951 - 14512029
Alignment:
Q  174 aaccccaaaattcaacaaccctcttctgcatcaatacttctcgttcccaatttcactcacaagattctgcaccacaaca 252  Q
    |||| |||||| ||||||||||||| | || ||| |||| || |||||| |||||||||||||||||| ||||||||||    
T  14511951 aaccgcaaaatccaacaaccctctttttcaccaacacttttccttcccattttcactcacaagattctccaccacaaca 14512029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 31968774 - 31968846
Alignment:
Q  121 aaatggtttctctcccacaatgctgttttaggtatcatcaccacaaaatcaacaaccccaaaattcaacaacc 193  Q
    |||| |||| ||||||| |||  |||||||||| ||||||| || ||||||||||||  ||||||||||||||    
T  31968774 aaattgtttttctcccataatcttgttttaggtgtcatcacaactaaatcaacaaccttaaaattcaacaacc 31968846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 15012857 - 15012929
Alignment:
Q  121 aaatggtttctctcccacaatgctgttttaggtatcatcaccacaaaatcaacaaccccaaaattcaacaacc 193  Q
    |||| |||| ||||||| |||  |||||||||| |||| || || ||||||||||||  ||||||||||||||    
T  15012857 aaattgtttttctcccagaatcttgttttaggtgtcataacaactaaatcaacaaccttaaaattcaacaacc 15012929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 15019349 - 15019421
Alignment:
Q  121 aaatggtttctctcccacaatgctgttttaggtatcatcaccacaaaatcaacaaccccaaaattcaacaacc 193  Q
    |||| |||| ||||||| |||  ||||||| || ||||||| || ||||||||||||  ||||||||||||||    
T  15019349 aaattgtttttctcccagaatcttgttttatgtctcatcacaactaaatcaacaaccttaaaattcaacaacc 15019421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 86 - 252
Target Start/End: Complemental strand, 17357490 - 17357339
Alignment:
Q  86 aaacctttgactaaattttccaaacaatgttgaagaaatggtttctctcccacaatgctgttttaggtatcatcaccacaaaatcaacaaccccaaaatt 185  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||| ||||| |||| ||||  ||| ||||||||| |||||||                   
T  17357490 aaacctttgactaaattttccaaaccatgatgaagaaatggtttctttcccagaatgttgttcaaggcatcatcaccgcaaaatc--------------- 17357406  T
Q  186 caacaaccctcttctgcatcaatacttctcgttcccaatttcactcacaagattctgcaccacaaca 252  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17357405 caaccaccctcttctgcaccaatacttctcgttcccaatttcactcacaagattctccaccacaaca 17357339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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