View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6273_high_27 (Length: 227)

Name: NF6273_high_27
Description: NF6273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6273_high_27
NF6273_high_27
[»] chr1 (12 HSPs)
chr1 (114-221)||(31109237-31109344)
chr1 (116-221)||(31116627-31116732)
chr1 (116-219)||(13416280-13416383)
chr1 (121-217)||(13415513-13415609)
chr1 (119-217)||(5491282-5491381)
chr1 (113-218)||(5490508-5490612)
chr1 (116-161)||(26240874-26240919)
chr1 (116-158)||(16449555-16449597)
chr1 (116-158)||(16459129-16459171)
chr1 (113-161)||(12449315-12449363)
chr1 (116-176)||(26240114-26240174)
chr1 (116-172)||(43552112-43552168)
[»] chr3 (16 HSPs)
chr3 (116-220)||(16076210-16076314)
chr3 (116-221)||(43453439-43453544)
chr3 (116-206)||(42020844-42020934)
chr3 (116-216)||(14746041-14746141)
chr3 (115-217)||(43454109-43454210)
chr3 (116-184)||(41419599-41419667)
chr3 (116-161)||(15287567-15287612)
chr3 (113-158)||(49350276-49350321)
chr3 (116-216)||(14746850-14746949)
chr3 (157-217)||(41418801-41418861)
chr3 (116-158)||(20807937-20807979)
chr3 (116-161)||(9831265-9831310)
chr3 (113-158)||(49349673-49349718)
chr3 (117-158)||(54308454-54308495)
chr3 (114-158)||(20808613-20808657)
chr3 (116-148)||(46595871-46595903)
[»] chr6 (7 HSPs)
chr6 (116-219)||(2138477-2138580)
chr6 (116-216)||(709322-709422)
chr6 (116-217)||(10966325-10966428)
chr6 (116-220)||(10965230-10965334)
chr6 (116-217)||(8113373-8113474)
chr6 (116-220)||(24980340-24980444)
chr6 (116-184)||(8114206-8114272)
[»] chr7 (13 HSPs)
chr7 (116-217)||(24873751-24873852)
chr7 (116-215)||(24874527-24874626)
chr7 (116-216)||(767914-768014)
chr7 (114-216)||(767134-767236)
chr7 (114-206)||(27918567-27918660)
chr7 (116-166)||(41965775-41965825)
chr7 (109-216)||(36611442-36611549)
chr7 (116-187)||(46491665-46491736)
chr7 (116-151)||(41965112-41965147)
chr7 (118-172)||(21975693-21975747)
chr7 (116-161)||(28007157-28007202)
chr7 (116-172)||(33261405-33261461)
chr7 (116-160)||(42818557-42818601)
[»] chr8 (12 HSPs)
chr8 (113-217)||(44376640-44376744)
chr8 (116-219)||(36402970-36403073)
chr8 (116-214)||(36402201-36402299)
chr8 (116-219)||(26132078-26132181)
chr8 (116-184)||(26847097-26847165)
chr8 (121-221)||(10333575-10333674)
chr8 (116-166)||(5434032-5434082)
chr8 (120-206)||(10331470-10331556)
chr8 (113-158)||(16911052-16911097)
chr8 (116-161)||(22632971-22633016)
chr8 (117-161)||(22632323-22632367)
chr8 (116-160)||(42663277-42663321)
[»] chr4 (11 HSPs)
chr4 (116-217)||(21280035-21280136)
chr4 (116-219)||(21281106-21281209)
chr4 (116-217)||(45141090-45141191)
chr4 (116-221)||(45140454-45140559)
chr4 (120-216)||(18363601-18363697)
chr4 (120-216)||(36599231-36599327)
chr4 (116-160)||(42792775-42792819)
chr4 (118-166)||(53778413-53778461)
chr4 (116-157)||(21837389-21837430)
chr4 (116-177)||(24666129-24666190)
chr4 (116-176)||(24666840-24666900)
[»] chr2 (2 HSPs)
chr2 (116-217)||(7754012-7754113)
chr2 (116-161)||(44296860-44296905)
[»] scaffold0006 (2 HSPs)
scaffold0006 (121-217)||(285183-285279)
scaffold0006 (139-219)||(285955-286035)
[»] chr5 (7 HSPs)
chr5 (115-216)||(24565572-24565673)
chr5 (115-216)||(24606608-24606709)
chr5 (116-158)||(23253492-23253534)
chr5 (116-161)||(39466885-39466930)
chr5 (116-163)||(40372161-40372208)
chr5 (116-157)||(23257319-23257360)
chr5 (116-161)||(39937909-39937954)


Alignment Details
Target: chr1 (Bit Score: 104; Significance: 5e-52; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 114 - 221
Target Start/End: Original strand, 31109237 - 31109344
Alignment:
Q  114 acggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaatta 213  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31109237 acggtggattctagggtgagggtccaattaggtccctcaccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaatta 31109336  T
Q  214 aaagtggg 221  Q
    ||||||||    
T  31109337 aaagtggg 31109344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 116 - 221
Target Start/End: Complemental strand, 31116732 - 31116627
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaa 215  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  31116732 ggtggattctagggtgagggtccaattaggtccctcaccggtggactacgagaaaaataccaatagattaaataagtggtacatatttatttaaattaaa 31116633  T
Q  216 agtggg 221  Q
    ||||||    
T  31116632 agtggg 31116627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 13416383 - 13416280
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaa 215  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||  ||||| ||| |  ||||| |||| |||| ||||||||    
T  13416383 ggtggattctaggatgagggtccaattaggtccctcgccggtggaccacgagaaaaacaccgttagataaaatagatggttaagatatattcaaattaaa 13416284  T
Q  216 agtg 219  Q
    ||||    
T  13416283 agtg 13416280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 121 - 217
Target Start/End: Original strand, 13415513 - 13415609
Alignment:
Q  121 attctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaaag 217  Q
    |||||||| ||||||||||||||| ||||||  || ||||| |||| ||||| |||||||||||||| || ||||| ||||| ||| ||||||||||    
T  13415513 attctaggatgagggtccaattagatccctcatcgatggaccacgaaaaaaacaccaatagattaaataaatggtttagattcattcaaattaaaag 13415609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 5491381 - 5491282
Alignment:
Q  119 ggattctagggtgagggtccaattaggtccctcgccggtggactacg-agaaaaataccaatagattaaacaagtggttcagatttatttaaattaaaag 217  Q
    |||||||||| |||||||||||||||||||||| ||||||||| ||| | ||||| ||||||| |||||| || ||||| ||||| | | ||||||||||    
T  5491381 ggattctaggatgagggtccaattaggtccctcaccggtggaccacgaaaaaaaacaccaataaattaaataaatggtttagattcagtcaaattaaaag 5491282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 218
Target Start/End: Original strand, 5490508 - 5490612
Alignment:
Q  113 aacggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaatt 212  Q
    |||||||||||||||| ||||||| |||||||||| |||  |||||||| |||||||||| |||  || || ||| |  ||||| ||||||||| |||||    
T  5490508 aacggtggattctagg-tgagggttcaattaggtctctcatcggtggaccacgagaaaaacaccgttaaataaaatagatggttaagatttattcaaatt 5490606  T
Q  213 aaaagt 218  Q
    ||||||    
T  5490607 aaaagt 5490612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 26240919 - 26240874
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggac 161  Q
    ||||||||||||||||||||| |||||| ||||||| |||||||||    
T  26240919 ggtggattctagggtgagggttcaattaagtccctcaccggtggac 26240874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 16449555 - 16449597
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtg 158  Q
    ||||||||||||||||||||| |||||| ||||||| ||||||    
T  16449555 ggtggattctagggtgagggttcaattaagtccctcaccggtg 16449597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 16459129 - 16459171
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtg 158  Q
    ||||||||||||||||||||| |||||| ||||||| ||||||    
T  16459129 ggtggattctagggtgagggttcaattaagtccctcaccggtg 16459171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 12449363 - 12449315
Alignment:
Q  113 aacggtggattctagggtgagggtccaattaggtccctcgccggtggac 161  Q
    ||||||||||| |||||||||||  |||||| ||||||| |||||||||    
T  12449363 aacggtggattttagggtgagggatcaattaagtccctcaccggtggac 12449315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 26240114 - 26240174
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaatacc 176  Q
    ||||||||||||||||||||  |||||| ||||||| |||||| || | || |||||||||    
T  26240114 ggtggattctagggtgagggatcaattaagtccctcaccggtgaaccatgacaaaaatacc 26240174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 43552112 - 43552168
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaa 172  Q
    ||||||||||||||||||| ||||||||  | |||| |||||| || ||||||||||    
T  43552112 ggtggattctagggtgaggatccaattaaattcctcaccggtgaaccacgagaaaaa 43552168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 16076210 - 16076314
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaa 215  Q
    |||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  16076210 ggtggattctagggtgagggtccaattaggtccctcaccaatggaccacgagaaaaatatcaatagattaaacaagtggttcagatttatttaaattaaa 16076309  T
Q  216 agtgg 220  Q
    |||||    
T  16076310 agtgg 16076314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 43453439 - 43453544
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaa 215  Q
    ||||||||||||||||||||||||||||  |||||| ||| ||||| ||||||||||||||||||||||||| |  ||||||| ||||||||||||||||    
T  43453439 ggtggattctagggtgagggtccaattaaatccctcaccgctggaccacgagaaaaataccaatagattaaatagatggttcaaatttatttaaattaaa 43453538  T
Q  216 agtggg 221  Q
    | ||||    
T  43453539 attggg 43453544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 116 - 206
Target Start/End: Complemental strand, 42020934 - 42020844
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatt 206  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||  |||| |||||||||||||||||||| |  |||||||||||||||    
T  42020934 ggtgaattctagggtgagggtccaattaggtctctcgccggtggatcacgaaaaaaataccaatagattaaatagatggttcagatttatt 42020844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 216
Target Start/End: Original strand, 14746041 - 14746141
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaa 215  Q
    ||||||||||||||||||||||||||||  |||||| ||||||||| |||| |||||  ||| ||||| ||| |  ||| ||||||||||||||||||||    
T  14746041 ggtggattctagggtgagggtccaattaaatccctccccggtggaccacgaaaaaaacgccactagatgaaatagatggatcagatttatttaaattaaa 14746140  T
Q  216 a 216  Q
    |    
T  14746141 a 14746141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 43454210 - 43454109
Alignment:
Q  115 cggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaa 214  Q
    ||||||||||||||||||||||||||||||||||||| || |||||| |||||||||  ||| || ||| ||| |  ||||||||||||||| ||||| |    
T  43454210 cggtggattctagggtgagggtccaattaggtccctcacctgtggaccacgagaaaac-accgatggataaaatagatggttcagatttattcaaattca 43454112  T
Q  215 aag 217  Q
    |||    
T  43454111 aag 43454109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 41419667 - 41419599
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagatt 184  Q
    |||||||||||| ||||||| ||||||||||||||| ||||||||| |||| ||||| |||||||||||    
T  41419667 ggtggattctagtgtgaggggccaattaggtccctcaccggtggaccacgaaaaaaacaccaatagatt 41419599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 15287567 - 15287612
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggac 161  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||    
T  15287567 ggtggattctagggtgagggtccaattaagtccctcaccggtggac 15287612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 49350321 - 49350276
Alignment:
Q  113 aacggtggattctagggtgagggtccaattaggtccctcgccggtg 158  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||    
T  49350321 aacggtggattctagggtgagggttcaattaagtccctcgccggtg 49350276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 14746949 - 14746850
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaa 215  Q
    ||||||||||||| |||||||||||||| |||||||  |||||||| |||| ||||| |||  ||||||||| |  ||||||| |||||||  |||||||    
T  14746949 ggtggattctagg-tgagggtccaattaagtccctcatcggtggaccacgaaaaaaacaccgttagattaaatacatggttcaaatttattcgaattaaa 14746851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 41418801 - 41418861
Alignment:
Q  157 tggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaaag 217  Q
    ||||| |||| |||||||||| ||||||||| || ||||||||||||||| ||||||||||    
T  41418801 tggaccacgaaaaaaataccattagattaaataaatggttcagatttattcaaattaaaag 41418861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 20807937 - 20807979
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtg 158  Q
    ||||||||||||||||||||| |||||| ||||||| ||||||    
T  20807937 ggtggattctagggtgagggttcaattaagtccctcaccggtg 20807979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 9831310 - 9831265
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggac 161  Q
    |||||||||| ||||||||||||||||| ||||||| | |||||||    
T  9831310 ggtggattctggggtgagggtccaattaagtccctcactggtggac 9831265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 49349673 - 49349718
Alignment:
Q  113 aacggtggattctagggtgagggtccaattaggtccctcgccggtg 158  Q
    |||||||||||||||||||||||  |||||| ||||||| ||||||    
T  49349673 aacggtggattctagggtgagggatcaattaagtccctcaccggtg 49349718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 54308454 - 54308495
Alignment:
Q  117 gtggattctagggtgagggtccaattaggtccctcgccggtg 158  Q
    |||||||||||||||||||| |||||| ||||||| ||||||    
T  54308454 gtggattctagggtgagggttcaattaagtccctcaccggtg 54308495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 20808657 - 20808613
Alignment:
Q  114 acggtggattctagggtgagggtccaattaggtccctcgccggtg 158  Q
    ||||||||||||||||||||||| ||| || ||||||| ||||||    
T  20808657 acggtggattctagggtgagggttcaagtaagtccctcaccggtg 20808613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 46595903 - 46595871
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtcc 148  Q
    |||||||||||||||||||||||||||| ||||    
T  46595903 ggtggattctagggtgagggtccaattaagtcc 46595871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 116 - 219
Target Start/End: Original strand, 2138477 - 2138580
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaa 215  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||| |  ||||| ||||||||| ||||||||    
T  2138477 ggtgaattctagggtgagggtccaattaggtccctcaccggtggaccacgagaaaaataccaataaattaaatagatggttgagatttattcaaattaaa 2138576  T
Q  216 agtg 219  Q
    ||||    
T  2138577 agtg 2138580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 116 - 216
Target Start/End: Original strand, 709322 - 709422
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaa 215  Q
    |||| |||||||| ||||||||||||||| |||||| ||| ||||  ||||||||||||||||||||||||| |  ||||||||||||||| ||||||||    
T  709322 ggtgaattctaggatgagggtccaattagatccctcaccgatggatcacgagaaaaataccaatagattaaatagatggttcagatttattcaaattaaa 709421  T
Q  216 a 216  Q
    |    
T  709422 a 709422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 116 - 217
Target Start/End: Complemental strand, 10966428 - 10966325
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaaca-ag-tggttcagatttatttaaatta 213  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||| |||||| ||| ||| | || ||||||| ||||||||||||||    
T  10966428 ggtggattctagggtgaaggtccaattaggtccctcaccggtggaccacgagaaaaacaccaatggatgaaatatagatggttcaaatttatttaaatta 10966329  T
Q  214 aaag 217  Q
    ||||    
T  10966328 aaag 10966325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 10965230 - 10965334
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaa 215  Q
    |||||||| |||||||| |||||||||| ||| |||  |||||||| | ||||||||||||| ||||||||| |  ||||||| ||||||||||||||||    
T  10965230 ggtggattttagggtgaaggtccaattaagtctctcatcggtggaccatgagaaaaataccattagattaaatagatggttcaaatttatttaaattaaa 10965329  T
Q  216 agtgg 220  Q
    |||||    
T  10965330 agtgg 10965334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 217
Target Start/End: Original strand, 8113373 - 8113474
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaa 215  Q
    |||||||||||||| |||||||||||||||||| ||  | |||||| |||| || |||||||||| |||||| |  ||||||| ||||||| ||||||||    
T  8113373 ggtggattctagggcgagggtccaattaggtccttcatctgtggaccacgaaaataataccaataaattaaatagatggttcaaatttattcaaattaaa 8113472  T
Q  216 ag 217  Q
    ||    
T  8113473 ag 8113474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 24980340 - 24980444
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaa 215  Q
    ||||||||| ||||||| | | ||||||||| |||| ||||||||| |||||||||| || | ||||| ||| |  ||||| | ||||||||||||||||    
T  24980340 ggtggattcaagggtgatgatacaattaggttcctcaccggtggaccacgagaaaaacactactagatgaaatagatggtttaaatttatttaaattaaa 24980439  T
Q  216 agtgg 220  Q
    |||||    
T  24980440 agtgg 24980444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 8114272 - 8114206
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagatt 184  Q
    |||||||||||||||||| | ||||||||||||||  ||| ||||| |||| ||||| | |||||||||    
T  8114272 ggtggattctagggtgagaggccaattaggtccct--ccgatggaccacgaaaaaaacatcaatagatt 8114206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 116 - 217
Target Start/End: Original strand, 24873751 - 24873852
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaa 215  Q
    ||||||||||||||||||||||||||||||||||||  | |||||| | || ||||| |||||||||||||| |||||||| ||||||||| ||||||||    
T  24873751 ggtggattctagggtgagggtccaattaggtccctcatcagtggaccatgaaaaaaacaccaatagattaaataagtggtttagatttattcaaattaaa 24873850  T
Q  216 ag 217  Q
    ||    
T  24873851 ag 24873852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 24874626 - 24874527
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaa 215  Q
    ||||||||||||||||||||| ||||||||||||||  |||||||| ||||||||||||||  ||||| ||| |  ||||| ||||||||| ||||||||    
T  24874626 ggtggattctagggtgagggttcaattaggtccctcatcggtggaccacgagaaaaataccgttagataaaatagatggttaagatttattcaaattaaa 24874527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 768014 - 767914
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaa 215  Q
    |||||||| ||||||||||||||||||| ||||||| ||||||||| |||| |||||||| | ||||| ||| |  ||| |||| |||||||||||||||    
T  768014 ggtggattttagggtgagggtccaattaagtccctcaccggtggaccacgaaaaaaatacaagtagataaaatagatggatcaggtttatttaaattaaa 767915  T
Q  216 a 216  Q
    |    
T  767914 a 767914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 114 - 216
Target Start/End: Original strand, 767134 - 767236
Alignment:
Q  114 acggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaatta 213  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||  | || ||||| |||  ||||||||| |  |||||||||||||||  |||||    
T  767134 acggtggattctagggtgagggtccaattaagtccctcaccggtggatcatgaaaaaaacaccgttagattaaatacatggttcagatttattcgaatta 767233  T
Q  214 aaa 216  Q
    |||    
T  767234 aaa 767236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 27918660 - 27918567
Alignment:
Q  114 acggtggattctagggtgagggtccaattaggtccctcgccggtggactacg-agaaaaataccaatagattaaacaagtggttcagatttatt 206  Q
    |||||| ||| |||| |||||||||||||||||||||| ||||||||  ||| | |||||||||||||||||||| |  ||||||| |||||||    
T  27918660 acggtgaattttaggatgagggtccaattaggtccctcaccggtggatcacgaaaaaaaataccaatagattaaatagatggttcatatttatt 27918567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 41965825 - 41965775
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacga 166  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||| ||||    
T  41965825 ggtggattctagggtgagggtccaattaagtccctcaccggtggaccacga 41965775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 36611549 - 36611442
Alignment:
Q  109 aaacaacggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttattta 208  Q
    |||||| ||||||||||||||||||||| ||||||  || ||| ||||||||| | ||  ||||||||| |||||| ||  | ||||| |||||| ||||    
T  36611549 aaacaatggtggattctagggtgagggttcaattaaatctctcaccggtggaccatgaacaaaataccattagatttaattaatggtttagattttttta 36611450  T
Q  209 aattaaaa 216  Q
    || |||||    
T  36611449 aaataaaa 36611442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 46491736 - 46491665
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaa 187  Q
    ||||||||||||||||||||| ||| || ||||||| |||||||||||  | |||||||||| | |||||||    
T  46491736 ggtggattctagggtgagggttcaactaagtccctcaccggtggactatcaaaaaaataccatttgattaaa 46491665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 41965112 - 41965147
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctc 151  Q
    |||||||||||||||||||||||||||| |||||||    
T  41965112 ggtggattctagggtgagggtccaattaagtccctc 41965147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 21975693 - 21975747
Alignment:
Q  118 tggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaa 172  Q
    ||||||||| || ||||||| ||||||||||||| ||||||||| || |||||||    
T  21975693 tggattctatggcgagggtctaattaggtccctcaccggtggaccacaagaaaaa 21975747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 28007157 - 28007202
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggac 161  Q
    ||||||||||||||||||||  |||||| ||||||| |||||||||    
T  28007157 ggtggattctagggtgagggagcaattaagtccctcaccggtggac 28007202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 33261461 - 33261405
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaa 172  Q
    ||||||||||||| |||||||||||||| ||||||| | | ||||| |||| |||||    
T  33261461 ggtggattctaggatgagggtccaattaagtccctcactgatggaccacgaaaaaaa 33261405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 42818601 - 42818557
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtgga 160  Q
    |||| |||||||||||||||| |||||| ||||||| ||||||||    
T  42818601 ggtgaattctagggtgagggttcaattaagtccctcaccggtgga 42818557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 113 - 217
Target Start/End: Original strand, 44376640 - 44376744
Alignment:
Q  113 aacggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaatt 212  Q
    ||||||||||||||||| ||||||||||||| |||||||  |||||||| |||| ||||||||||||| |||||| |  ||||||||||||||| |||||    
T  44376640 aacggtggattctagggcgagggtccaattacgtccctcatcggtggaccacgaaaaaaataccaataaattaaatagatggttcagatttattcaaatt 44376739  T
Q  213 aaaag 217  Q
    |||||    
T  44376740 aaaag 44376744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 36403073 - 36402970
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaa 215  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||| ||   ||||| ||| |  ||||| ||||||||| ||||||||    
T  36403073 ggtggattctagagtgagggtccaattaggtccctcaccggtggaccacgagaaaaacacagttagataaaatagatggttaagatttattcaaattaaa 36402974  T
Q  216 agtg 219  Q
    ||||    
T  36402973 agtg 36402970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 116 - 214
Target Start/End: Original strand, 36402201 - 36402299
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaa 214  Q
    |||||||| ||||||||||||||||||||||||| | ||||||||| |||| ||||| |||||||||||||| || ||||| | ||| ||| |||||||    
T  36402201 ggtggattttagggtgagggtccaattaggtcccacaccggtggaccacgaaaaaaacaccaatagattaaataaatggtttaaattcattcaaattaa 36402299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 26132181 - 26132078
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaa 215  Q
    |||||||| || |||||||||||||||||||||||| | ||||||| |||||||||| |||  ||||| ||| |  ||||| ||||||||| ||||||||    
T  26132181 ggtggattttaaggtgagggtccaattaggtccctcactggtggaccacgagaaaaacaccgttagataaaatagatggttaagatttattgaaattaaa 26132082  T
Q  216 agtg 219  Q
    ||||    
T  26132081 agtg 26132078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 26847097 - 26847165
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagatt 184  Q
    |||||||||||||||||||||||||||| ||||||| |||||| || |||  |||||||||| ||||||    
T  26847097 ggtggattctagggtgagggtccaattaagtccctcaccggtgaaccacggaaaaaataccattagatt 26847165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 10333674 - 10333575
Alignment:
Q  121 attctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaaagtgg 220  Q
    |||||| |||||||||||||||||||||||| || |||||| ||||| |||| ||   || || ||| |  ||||| |||||||||||||||||||||||    
T  10333674 attctaaggtgagggtccaattaggtccctcaccagtggaccacgag-aaaacacagctaaataaaatagatggtttagatttatttaaattaaaagtgg 10333576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 5434032 - 5434082
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacga 166  Q
    |||||||||||||||||||||||||||| |||| || ||||||||| ||||    
T  5434032 ggtggattctagggtgagggtccaattaagtccttcaccggtggaccacga 5434082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 120 - 206
Target Start/End: Original strand, 10331470 - 10331556
Alignment:
Q  120 gattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatt 206  Q
    |||| ||||||||||||||||||||||| |||  |||||||| |||||||||| ||   ||||| ||| |  |||||||||||||||    
T  10331470 gattatagggtgagggtccaattaggtctctcatcggtggaccacgagaaaaaaactgttagatgaaatagatggttcagatttatt 10331556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 16911097 - 16911052
Alignment:
Q  113 aacggtggattctagggtgagggtccaattaggtccctcgccggtg 158  Q
    |||||||||||||||||||||||  |||||| ||||||| ||||||    
T  16911097 aacggtggattctagggtgagggctcaattaagtccctcaccggtg 16911052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 22633016 - 22632971
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggac 161  Q
    ||||||||||||||||||||  |||||| ||||||| |||||||||    
T  22633016 ggtggattctagggtgagggatcaattaagtccctcaccggtggac 22632971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 22632323 - 22632367
Alignment:
Q  117 gtggattctagggtgagggtccaattaggtccctcgccggtggac 161  Q
    |||||||||||||||||||  |||||| ||||||| |||||||||    
T  22632323 gtggattctagggtgagggatcaattaagtccctcaccggtggac 22632367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 42663277 - 42663321
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtgga 160  Q
    |||||||||||||||||| ||||||||| ||| ||| ||||||||    
T  42663277 ggtggattctagggtgagagtccaattaagtctctcaccggtgga 42663321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 116 - 217
Target Start/End: Original strand, 21280035 - 21280136
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaa 215  Q
    ||||||||||||| |||||||||||||||||||||  | |||||||||||| ||||| |||||||||||||| || ||||| ||||| ||| ||||||||    
T  21280035 ggtggattctaggatgagggtccaattaggtcccttactggtggactacgaaaaaaacaccaatagattaaataaatggtttagattcattcaaattaaa 21280134  T
Q  216 ag 217  Q
    ||    
T  21280135 ag 21280136  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 21281209 - 21281106
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaa 215  Q
    ||||||||||||||||||||||||||||| ||||||  |||||||| |||||||||| |||  ||||| ||| |  ||||| | ||||||| ||||||||    
T  21281209 ggtggattctagggtgagggtccaattagatccctcatcggtggaccacgagaaaaacaccgttagataaaatagatggttaaaatttattcaaattaaa 21281110  T
Q  216 agtg 219  Q
    ||||    
T  21281109 agtg 21281106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 116 - 217
Target Start/End: Complemental strand, 45141191 - 45141090
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaa 215  Q
    ||||||||||||||||||||||||||||| ||||||  || ||||| | |||||||| | | |||||| ||| |  ||||||||||||||| | ||||||    
T  45141191 ggtggattctagggtgagggtccaattagatccctcatcgatggaccatgagaaaaacaacgatagatgaaatagatggttcagatttattcagattaaa 45141092  T
Q  216 ag 217  Q
    ||    
T  45141091 ag 45141090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 45140454 - 45140559
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaa 215  Q
    ||||||||||||||||| |||||||| | |||| ||  ||| |||| |||||||||| ||  ||| || ||| |  ||||||||||||||| ||||||||    
T  45140454 ggtggattctagggtgaaggtccaatcaagtccttcatcggcggacaacgagaaaaacacttatatatgaaatagatggttcagatttattcaaattaaa 45140553  T
Q  216 agtggg 221  Q
    ||||||    
T  45140554 agtggg 45140559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 18363697 - 18363601
Alignment:
Q  120 gattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaaa 216  Q
    ||||||||||||||||| |||||| || |||| ||||||||| ||||  ||||||||| | |||| ||  | ||||| ||||||||| ||| |||||    
T  18363697 gattctagggtgagggttcaattaagttcctcaccggtggaccacgaagaaaataccattcgattgaatcaatggttgagatttattgaaaataaaa 18363601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 216
Target Start/End: Original strand, 36599231 - 36599327
Alignment:
Q  120 gattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaaa 216  Q
    ||||||||||||||||| |||||| || |||| ||||||||| ||||  ||||||||| | |||| ||  | ||||| ||||||||| ||| |||||    
T  36599231 gattctagggtgagggttcaattaagttcctcaccggtggaccacgaagaaaataccattcgattgaatcaatggttgagatttattgaaaataaaa 36599327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 42792775 - 42792819
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtgga 160  Q
    |||||||||||||||||||||||||||| ||||||| ||| ||||    
T  42792775 ggtggattctagggtgagggtccaattaagtccctcaccgatgga 42792819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 53778461 - 53778413
Alignment:
Q  118 tggattctagggtgagggtccaattaggtccctcgccggtggactacga 166  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||| ||||    
T  53778461 tggattctagggtgagggtccatttaagtccctcaccggtggaccacga 53778413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 21837389 - 21837430
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggt 157  Q
    ||||||||||||||||||||||||| || ||||||| |||||    
T  21837389 ggtggattctagggtgagggtccaactaagtccctcaccggt 21837430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 24666129 - 24666190
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaatacca 177  Q
    ||||||||||||||||||||  |||||| ||||||| |||||| || | || ||||||||||    
T  24666129 ggtggattctagggtgagggatcaattaagtccctcaccggtgaaccatgacaaaaatacca 24666190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 24666900 - 24666840
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaatacc 176  Q
    |||||||| |||||||||||| |||||| ||||||| | ||||||| | || |||||||||    
T  24666900 ggtggattatagggtgagggttcaattaagtccctccctggtggaccatgaaaaaaatacc 24666840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 116 - 217
Target Start/End: Original strand, 7754012 - 7754113
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaa 215  Q
    |||||||||||||||||||||||||||||||||||| ||||||||  |||| ||||||||||||| || ||| |  | ||||||||||||| ||||||||    
T  7754012 ggtggattctagggtgagggtccaattaggtccctccccggtggatcacgaaaaaaataccaataaataaaatagatagttcagatttattcaaattaaa 7754111  T
Q  216 ag 217  Q
    ||    
T  7754112 ag 7754113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 44296860 - 44296905
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggac 161  Q
    |||| ||||||||||||||||||||||| ||||||| | |||||||    
T  44296860 ggtgaattctagggtgagggtccaattaagtccctcactggtggac 44296905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 217
Target Start/End: Original strand, 285183 - 285279
Alignment:
Q  121 attctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaaag 217  Q
    ||||||||||||||||||||||||||||||  ||||||||| |||| ||||| | |||||||||||| || | ||| ||||| ||| ||||||||||    
T  285183 attctagggtgagggtccaattaggtcccttaccggtggaccacgaaaaaaacatcaatagattaaataaattgtttagattcattcaaattaaaag 285279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 286035 - 285955
Alignment:
Q  139 aattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaaagtg 219  Q
    ||||||||||||  ||||||||| |||||||||| |||  ||||| ||| |  ||||| ||||||||| ||||||||||||    
T  286035 aattaggtcccttaccggtggaccacgagaaaaacaccgttagataaaatagatggttaagatttattcaaattaaaagtg 285955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 216
Target Start/End: Original strand, 24565572 - 24565673
Alignment:
Q  115 cggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaa 214  Q
    |||||||||||||||||||||| ||||||  |||||| ||||||||| | ||  ||||||||| |||||| ||  | ||||| |||||| |||||| |||    
T  24565572 cggtggattctagggtgagggttcaattaaatccctcaccggtggaccatgaacaaaataccattagatttaattaatggtttagatttttttaaaataa 24565671  T
Q  215 aa 216  Q
    ||    
T  24565672 aa 24565673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 216
Target Start/End: Original strand, 24606608 - 24606709
Alignment:
Q  115 cggtggattctagggtgagggtccaattaggtccctcgccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaa 214  Q
    |||||||||||||||||||||| ||||||  |||||| ||||||||| | ||  ||||||||| |||||| ||  | ||||| |||||| |||||| |||    
T  24606608 cggtggattctagggtgagggttcaattaaatccctcaccggtggaccatgaacaaaataccattagatttaattaatggtttagatttttttaaaataa 24606707  T
Q  215 aa 216  Q
    ||    
T  24606708 aa 24606709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 23253534 - 23253492
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtg 158  Q
    |||||||||||||||||||||||||||| ||||||| ||||||    
T  23253534 ggtggattctagggtgagggtccaattaagtccctcaccggtg 23253492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 39466885 - 39466930
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggac 161  Q
    |||| ||||||||||||||||||||||| ||||||| |||||||||    
T  39466885 ggtgaattctagggtgagggtccaattaagtccctcaccggtggac 39466930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 40372208 - 40372161
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggacta 163  Q
    ||||||||||||||||||||| |||||| || |||| |||||||||||    
T  40372208 ggtggattctagggtgagggttcaattaagttcctcaccggtggacta 40372161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 23257319 - 23257360
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggt 157  Q
    |||||||||||| ||||||||||||||| ||||||| |||||    
T  23257319 ggtggattctagagtgagggtccaattaagtccctcaccggt 23257360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 39937954 - 39937909
Alignment:
Q  116 ggtggattctagggtgagggtccaattaggtccctcgccggtggac 161  Q
    ||||||||||||||||||||| || ||| ||||||| |||||||||    
T  39937954 ggtggattctagggtgagggttcagttaagtccctcaccggtggac 39937909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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