View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6273_high_6 (Length: 419)
Name: NF6273_high_6
Description: NF6273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6273_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 14 - 400
Target Start/End: Complemental strand, 31171802 - 31171416
Alignment:
| Q |
14 |
agagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgttgctgg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31171802 |
agagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgttgctag |
31171703 |
T |
|
| Q |
114 |
aaatggttggagggaggaaaaacattattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttgtcactaa |
213 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31171702 |
aaatggttggagggaggaaaaacatcattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttggcactaa |
31171603 |
T |
|
| Q |
214 |
tctgagacctgatggggttatggatacagaagaagatgagattgcaaggagaatgactattgtgggtttatggtgcattcaaacatttccaagtgataga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31171602 |
tctgagacctgatggggttatggatacagaagaagatgagattgcaaggagaatgactattgtgggtttatggtgcattcaaacatttccaagtgataga |
31171503 |
T |
|
| Q |
314 |
cctacaatgagtaaagtgattgaaatgttagaagttaatatgaattcactggaaatgccaccaaaaccattgcattcatctcccact |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31171502 |
cctacaatgagtaaagtgattgaaatgttagaagttacaatgaattcactggaaatgccaccaaaaccattacattcatctcccact |
31171416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 14 - 396
Target Start/End: Complemental strand, 31145489 - 31145107
Alignment:
| Q |
14 |
agagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgttgctgg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31145489 |
agagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgttgctag |
31145390 |
T |
|
| Q |
114 |
aaatggttggagggaggaaaaacattattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttgtcactaa |
213 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31145389 |
aaatggttggagggaggaaaaacatcattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttggcactaa |
31145290 |
T |
|
| Q |
214 |
tctgagacctgatggggttatggatacagaagaagatgagattgcaaggagaatgactattgtgggtttatggtgcattcaaacatttccaagtgataga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31145289 |
tctgagacctgatggggttatggatacagaagaagatgagattgcaaggagaatgactattgtgggtttatggtgcattcaaacatttccaagtgataga |
31145190 |
T |
|
| Q |
314 |
cctacaatgagtaaagtgattgaaatgttagaagttaatatgaattcactggaaatgccaccaaaaccattgcattcatctcc |
396 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||| ||||| |||| ||| ||||| |
|
|
| T |
31145189 |
cctacaatgagtaaagttattgaaatgttagaagttaacatgaattcacttgaaataccacccaaaccgttgctttcttctcc |
31145107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 14 - 383
Target Start/End: Complemental strand, 31189547 - 31189178
Alignment:
| Q |
14 |
agagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgttgctgg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31189547 |
agagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgttgctgg |
31189448 |
T |
|
| Q |
114 |
aaatggttggagggaggaaaaacattattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttgtcactaa |
213 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31189447 |
aaatggttggtgggaggaaaaacattattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttggcactaa |
31189348 |
T |
|
| Q |
214 |
tctgagacctgatggggttatggatacagaagaagatgagattgcaaggagaatgactattgtgggtttatggtgcattcaaacatttccaagtgataga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31189347 |
tctgagacctgatggggttatggatacagaagaagacgagattgcaaggagaatgacaattgtgggtttatggtgcattcaaacatttccaagtgataga |
31189248 |
T |
|
| Q |
314 |
cctacaatgagtaaagtgattgaaatgttagaagttaatatgaattcactggaaatgccaccaaaaccat |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||| ||||||| |
|
|
| T |
31189247 |
cctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccat |
31189178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 14 - 383
Target Start/End: Complemental strand, 31201354 - 31200985
Alignment:
| Q |
14 |
agagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgttgctgg |
113 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
31201354 |
agagggactatgggatatgtagctccagaaatgtggaatagacattttggaggagtttcatacaagtccgatgtttatagttatggaatgatgttgctgg |
31201255 |
T |
|
| Q |
114 |
aaatggttggagggaggaaaaacattattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttgtcactaa |
213 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||| || ||||||||||||||||| ||||||| | ||| |
|
|
| T |
31201254 |
aaatggttggagggaggaaaaacattaatgctgatgcaagtctcacaagtgagatatactttcctcactgggtatacaataggcttgagcttggtagtaa |
31201155 |
T |
|
| Q |
214 |
tctgagacctgatggggttatggatacagaagaagatgagattgcaaggagaatgactattgtgggtttatggtgcattcaaacatttccaagtgataga |
313 |
Q |
| |
|
| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31201154 |
tttgagacctgatggagttatggatacagaagaagacaagattgcaaggagaatgacaattgtgggtttatggtgcattcaaacatttccaagtgataga |
31201055 |
T |
|
| Q |
314 |
cctacaatgagtaaagtgattgaaatgttagaagttaatatgaattcactggaaatgccaccaaaaccat |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||| ||||||| |
|
|
| T |
31201054 |
cctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccat |
31200985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 14 - 396
Target Start/End: Original strand, 31224602 - 31224984
Alignment:
| Q |
14 |
agagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgttgctgg |
113 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
31224602 |
agaggaacaatggggtatgtagctccagaagtgtggaatagacattttggaggagtttcacacaagtctgatgtttatagttatggaatgatattgctgg |
31224701 |
T |
|
| Q |
114 |
aaatggttggagggaggaaaaacattattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttgtcactaa |
213 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| ||||| |||||||||||||| ||||| ||||||| | | | |
|
|
| T |
31224702 |
aaatggttggagggaggaaaaacattaatgctgatgcaagtcgcacaagtgagatatattttcctcattgggtatacaaaaggcttgagcttgctagtga |
31224801 |
T |
|
| Q |
214 |
tctgagacctgatggggttatggatacagaagaagatgagattgcaaggagaatgactattgtgggtttatggtgcattcaaacatttccaagtgataga |
313 |
Q |
| |
|
| | ||||||||||| | |||||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||| |||||||| ||||| | |||||| |
|
|
| T |
31224802 |
ttttagacctgatggaataatggatacagaagaagataagattgcaaggagaatgaccattgtaggtttgtggtgtattcaaacgtttcctaatgatagg |
31224901 |
T |
|
| Q |
314 |
cctacaatgagtaaagtgattgaaatgttagaagttaatatgaattcactggaaatgccaccaaaaccattgcattcatctcc |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||| ||| ||||| |
|
|
| T |
31224902 |
cctacaatgagtaaagtgattgaaatgttagatgttagcatgaattcgttggaaatgccaccaaaaccattgctttcttctcc |
31224984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 396
Target Start/End: Original strand, 30961097 - 30961479
Alignment:
| Q |
14 |
agagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgttgctgg |
113 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | |
|
|
| T |
30961097 |
agagggacaatggggtatgtagctcctgaagtgtggaatagacattttggaggagtttcacacaagtctgatgtttatagttatggaatgatgttgttag |
30961196 |
T |
|
| Q |
114 |
aaatggttggagggaggaaaaacattattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttgtcactaa |
213 |
Q |
| |
|
||||||| || || ||||||| |||| ||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| || |||| | | | |
|
|
| T |
30961197 |
aaatggtgggtggacggaaaaatattaatgcggatgcaagtcacacaagtgagatatactttcctcattgggtatacaataggcttgaacttggtagtga |
30961296 |
T |
|
| Q |
214 |
tctgagacctgatggggttatggatacagaagaagatgagattgcaaggagaatgactattgtgggtttatggtgcattcaaacatttccaagtgataga |
313 |
Q |
| |
|
| |||||||||||||||| | |||||||||||| |||||||||||| ||||||||| ||||||||||| ||||| |||||||||||||| | || || |
|
|
| T |
30961297 |
tttgagacctgatggggtaactgatacagaagaaaatgagattgcaaagagaatgaccattgtgggtttgtggtgtattcaaacatttcctaatggcagg |
30961396 |
T |
|
| Q |
314 |
cctacaatgagtaaagtgattgaaatgttagaagttaatatgaattcactggaaatgccaccaaaaccattgcattcatctcc |
396 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||| |||||||||||||||| ||| ||||| |
|
|
| T |
30961397 |
cctacaatgagtaaagtagttgaaatgttagaagttaacatgaattcattggaaataccaccaaaaccattgctttcgtctcc |
30961479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 396
Target Start/End: Original strand, 30992579 - 30992961
Alignment:
| Q |
14 |
agagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgttgctgg |
113 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | |
|
|
| T |
30992579 |
agagggacaatggggtatgtagctccagaagtgtggaatagacattttggaggagtttcacacaagtctgatgtttatagttatggaatgatgttgttag |
30992678 |
T |
|
| Q |
114 |
aaatggttggagggaggaaaaacattattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttgtcactaa |
213 |
Q |
| |
|
||||||| || || ||||||| |||| ||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| || |||| | | | |
|
|
| T |
30992679 |
aaatggtgggtggacggaaaaatattaatgcggatgcaagtcacacaagtgagatatactttcctcattgggtatacaataggcttgaacttggtagtta |
30992778 |
T |
|
| Q |
214 |
tctgagacctgatggggttatggatacagaagaagatgagattgcaaggagaatgactattgtgggtttatggtgcattcaaacatttccaagtgataga |
313 |
Q |
| |
|
| |||||||||||||||| |||||||| ||||||||||||||||||| ||| ||||| |||||| |||| ||||| |||||||||||||| | || ||| |
|
|
| T |
30992779 |
tttgagacctgatggggtaatggatacggaagaagatgagattgcaaagaggatgaccattgtgagtttgtggtgtattcaaacatttcctaatggcaga |
30992878 |
T |
|
| Q |
314 |
cctacaatgagtaaagtgattgaaatgttagaagttaatatgaattcactggaaatgccaccaaaaccattgcattcatctcc |
396 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| | || ||||| ||||||| |||||||||||||||| ||| ||||| |
|
|
| T |
30992879 |
cctacaatgagtaaagtagttgaaatgttagaagttgacattaattcgttggaaataccaccaaaaccattgctttcgtctcc |
30992961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 14 - 381
Target Start/End: Original strand, 31229882 - 31230249
Alignment:
| Q |
14 |
agagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgttgctgg |
113 |
Q |
| |
|
|||||||||||||| ||||||||||| || | ||||||| | |||||||| ||||||| ||||| ||||| |||||||||||||||||||||||||| | |
|
|
| T |
31229882 |
agagggacaatggggtatgtagctcctgagttatggaatataaattttggatgagtttcgcacaagtctgacgtttatagttatggaatgatgttgctag |
31229981 |
T |
|
| Q |
114 |
aaatggttggagggaggaaaaacattattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttgtcactaa |
213 |
Q |
| |
|
|||||||||| |||||||||||||||| || ||||||||||| || ||||||||||||||||| |||||||||||||| | || || || || | | |
|
|
| T |
31229982 |
aaatggttggtgggaggaaaaacattaacgccgatgcaagtcaaacaagtgagatatactttcctcattgggtatacaagaatcttgatctacgcaatga |
31230081 |
T |
|
| Q |
214 |
tctgagacctgatggggttatggatacagaagaagatgagattgcaaggagaatgactattgtgggtttatggtgcattcaaacatttccaagtgataga |
313 |
Q |
| |
|
| ||||||| || | || || | | ||||||||||| |||||||||||| |||| ||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31230082 |
tttgagaccggacgaagtgattgtctcggaagaagatgaaattgcaaggagattgaccattgtaggtttatggtgcattcaaacatttccaaatgataga |
31230181 |
T |
|
| Q |
314 |
cctacaatgagtaaagtgattgaaatgttagaagttaatatgaattcactggaaatgccaccaaaacc |
381 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||| || | ||||| ||||||| ||||||||||| |
|
|
| T |
31230182 |
ccaacaatgagtagagtgattgaaatgttagaaggcaacaagaattgtttggaaataccaccaaaacc |
31230249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 14 - 381
Target Start/End: Original strand, 31214333 - 31214697
Alignment:
| Q |
14 |
agagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgttgctgg |
113 |
Q |
| |
|
||||| || ||||||||||||||||| || ||||||||||| | |||||||| ||||| |||| ||||||||||||||||| |||||||||||| ||| |
|
|
| T |
31214333 |
agaggaacgatgggatatgtagctcctgagttgtggaatagaaactttggaggcgtttcgtacaagtctgatgtttatagttacggaatgatgttgttgg |
31214432 |
T |
|
| Q |
114 |
aaatggttggagggaggaaaaacattattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttgtcactaa |
213 |
Q |
| |
|
|||| | ||||| ||||||||||||| ||| |||||||||| || ||||||| ||||||||| ||||||||||||| ||| | || || | |||| | |
|
|
| T |
31214433 |
aaataatcggaggaaggaaaaacattagtgccaatgcaagtcatacaagtgagaaatactttcctgattgggtatacaaaaggtttgatctagacactga |
31214532 |
T |
|
| Q |
214 |
tctgagacctgatggggttatggatacagaagaagatgagattgcaaggagaatgactattgtgggtttatggtgcattcaaacatttccaagtgataga |
313 |
Q |
| |
|
| |||||| |||| || || | || ||| ||||| || |||| ||||||||| || || || |||||||||||||||||| |||||| ||||||| |
|
|
| T |
31214533 |
tttgagacacgatgaagtgattgccac---agatgatgacatcgcaaagagaatgaccatagtaggattatggtgcattcaaacacttccaaatgataga |
31214629 |
T |
|
| Q |
314 |
cctacaatgagtaaagtgattgaaatgttagaagttaatatgaattcactggaaatgccaccaaaacc |
381 |
Q |
| |
|
||| ||||||||| ||| |||||||||||||||| ||| ||| |||| ||||||| || |||||||| |
|
|
| T |
31214630 |
cctgcaatgagtagagttattgaaatgttagaaggcaatgtgagttcattggaaatacccccaaaacc |
31214697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 26 - 381
Target Start/End: Original strand, 30955364 - 30955716
Alignment:
| Q |
26 |
ggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgttgctggaaatggttggag |
125 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| | | || |||||||||| |
|
|
| T |
30955364 |
ggatatgtagctccagaagtatggaatagacaatttggaggagtttcacacaagtctgatgtttatagttatggaatgatgcttttagagatggttggag |
30955463 |
T |
|
| Q |
126 |
ggaggaaaaacattattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttgtcactaatctgagacctga |
225 |
Q |
| |
|
||| || || ||| || | || ||| ||| ||||| ||| || |||||| ||||| ||||||||| |||||| | | | || |||||||||| |
|
|
| T |
30955464 |
tgagaaacaatattgatgttaatacaaatcaaactagcgag---tattttccagattggatatacaataagctagaaaaggagagtgatttgagacctga |
30955560 |
T |
|
| Q |
226 |
tggggttatggatacagaagaagatgagattgcaaggagaatgactattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagt |
325 |
Q |
| |
|
|| |||| | |||||| |||||||||||| ||||||| ||||| ||||||||||||||||||||||| |||| |||| |||| ||||||||| |
|
|
| T |
30955561 |
catagtgatggccattgaagaaaatgagattgcaaaaggaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagt |
30955660 |
T |
|
| Q |
326 |
aaagtgattgaaatgttagaagttaatatgaattcactggaaatgccaccaaaacc |
381 |
Q |
| |
|
| ||||||||||||||| |||| || |||||| || ||||| ||||||||||| |
|
|
| T |
30955661 |
agagtgattgaaatgttggaaggtagcatgaatgtccttgaaataccaccaaaacc |
30955716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 26 - 381
Target Start/End: Original strand, 30945104 - 30945456
Alignment:
| Q |
26 |
ggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgttgctggaaatggttggag |
125 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| | | || ||||| |||| |
|
|
| T |
30945104 |
ggatatgtagctccagaagtatggaatagacaatttggaggagtttcacacaagtctgatgtttatagttatggaatgatgcttttagagatggtgggag |
30945203 |
T |
|
| Q |
126 |
ggaggaaaaacattattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagagcttgtcactaatctgagacctga |
225 |
Q |
| |
|
||| || || ||| || | | ||| ||| ||||| ||| || |||||| ||||| ||||||||| |||||| | | | || ||||| |||| |
|
|
| T |
30945204 |
tgagaaacaatattgatgttaaaacaaatcaaactagcgag---tattttccagattggatatacaataagctagaaacggatagtgatttgagatctga |
30945300 |
T |
|
| Q |
226 |
tggggttatggatacagaagaagatgagattgcaaggagaatgactattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagt |
325 |
Q |
| |
|
|| |||| | |||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| |||| |||| |||| ||||||||| |
|
|
| T |
30945301 |
catagtgatggccattgaagaaaatgagattgcaaaaggaatgactattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagt |
30945400 |
T |
|
| Q |
326 |
aaagtgattgaaatgttagaagttaatatgaattcactggaaatgccaccaaaacc |
381 |
Q |
| |
|
| ||||||||||||||| |||| || |||||| || ||||| ||||||||||| |
|
|
| T |
30945401 |
agagtgattgaaatgttggaaggtagcatgaatatccttgaaataccaccaaaacc |
30945456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 267 - 381
Target Start/End: Original strand, 44036030 - 44036144
Alignment:
| Q |
267 |
tgactattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaatatgaattcactgga |
366 |
Q |
| |
|
||||||| || ||||| ||||||||||||||| |||| | | ||||||||||||| |||||||||||||| ||||| || | || ||| |||| |||| |
|
|
| T |
44036030 |
tgactatggttggtttgtggtgcattcaaacaattcctactcatagacctacaataagtaaagtgattgatatgttggatggtagcatggattctttgga |
44036129 |
T |
|
| Q |
367 |
aatgccaccaaaacc |
381 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
44036130 |
aatgccaccaaaacc |
44036144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 44035822 - 44035886
Alignment:
| Q |
68 |
gtttcacacaaatctgatgtttatagttatggaatgatgttgctggaaatggttggagggaggaa |
132 |
Q |
| |
|
|||||||| || |||||||| |||||||| |||||||||||||| ||||||||||| ||| |||| |
|
|
| T |
44035822 |
gtttcacataagtctgatgtctatagttacggaatgatgttgctagaaatggttggtgggcggaa |
44035886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 10906998 - 10907039
Alignment:
| Q |
75 |
acaaatctgatgtttatagttatggaatgatgttgctggaaa |
116 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
10906998 |
acaaatcagatgtttatagttatggaatgatgttgcttgaaa |
10907039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 10930881 - 10930922
Alignment:
| Q |
75 |
acaaatctgatgtttatagttatggaatgatgttgctggaaa |
116 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
10930881 |
acaaatcagatgtttatagttatggaatgatgttgcttgaaa |
10930922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 10993085 - 10993126
Alignment:
| Q |
75 |
acaaatctgatgtttatagttatggaatgatgttgctggaaa |
116 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
10993085 |
acaaatcagatgtttatagttatggaatgatgttgcttgaaa |
10993126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 49215559 - 49215612
Alignment:
| Q |
53 |
agacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatg |
106 |
Q |
| |
|
||||||||||| || || ||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
49215559 |
agacattttggtggggtgtcacataaatcagatgtttatagttatggaatgatg |
49215612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 11041245 - 11041285
Alignment:
| Q |
76 |
caaatctgatgtttatagttatggaatgatgttgctggaaa |
116 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
11041245 |
caaatcggatgtttatagttatggaatgatgttgcttgaaa |
11041285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 49683286 - 49683357
Alignment:
| Q |
52 |
tagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgttgctggaaatggttgg |
123 |
Q |
| |
|
|||||||||||| || || ||||||||||| ||||| || ||||||||||||||| | | ||||||||||| |
|
|
| T |
49683286 |
tagacattttggtggggtgtcacacaaatcagatgtctacagttatggaatgatggttttagaaatggttgg |
49683357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 49728717 - 49728788
Alignment:
| Q |
35 |
gctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatg |
106 |
Q |
| |
|
||||||||||||| |||| ||||||| || || || |||||||||||||| |||||||||||||||||| |
|
|
| T |
49728717 |
gctccagaagtgttctctagaaattttggtggcgtctctcacaaatctgatgtatatagttatggaatgatg |
49728788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 9125151 - 9125105
Alignment:
| Q |
80 |
tctgatgtttatagttatggaatgatgttgctggaaatggttggagg |
126 |
Q |
| |
|
|||||| ||||||||||||| ||| ||||||||||| |||||||||| |
|
|
| T |
9125151 |
tctgatatttatagttatgggatgttgttgctggaattggttggagg |
9125105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 11026541 - 11026582
Alignment:
| Q |
75 |
acaaatctgatgtttatagttatggaatgatgttgctggaaa |
116 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| |||| |
|
|
| T |
11026541 |
acaaatcagatgtttacagttatggaatgatgttgcttgaaa |
11026582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 138
Target Start/End: Original strand, 49725317 - 49725398
Alignment:
| Q |
57 |
attttggaggagtttcacacaaatctgatgtttatagttatggaatgatgttgctggaaatggttggagggaggaaaaacat |
138 |
Q |
| |
|
||||||| | ||| ||||| || || |||||||| ||||||||||||||| | ||||||||||||| |||| |||||||| |
|
|
| T |
49725317 |
attttggtgcagtgtcacataagtcagatgtttacagttatggaatgatggtcatggaaatggttgggaggagaaaaaacat |
49725398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 49714555 - 49714607
Alignment:
| Q |
71 |
tcacacaaatctgatgtttatagttatggaatgatgttgctggaaatggttgg |
123 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||| | | ||||||||||| |
|
|
| T |
49714555 |
tcacataaatcagatgtttatagttatggaatgatggttttagaaatggttgg |
49714607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 31614633 - 31614566
Alignment:
| Q |
59 |
tttggaggagtttcacacaaatctgatgtttatagttatggaatgatgttgctggaaatggttggagg |
126 |
Q |
| |
|
||||| |||||||| ||||||||||||| ||||||||||||||| || | || |||||| ||||||| |
|
|
| T |
31614633 |
tttggcggagtttcttacaaatctgatgtatatagttatggaatgttgattcttgaaatgattggagg |
31614566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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