View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6273_high_7 (Length: 359)
Name: NF6273_high_7
Description: NF6273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6273_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 11 - 349
Target Start/End: Complemental strand, 25581707 - 25581369
Alignment:
| Q |
11 |
tttccccttgcctataaggataactgaaaacacaaagacacagtttgaagaccaagctgttataagttacaatcatgatacacaagtataatgagaggaa |
110 |
Q |
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| T |
25581707 |
tttccccttgcctataaggataactgaaaacacaaagacacagtttgaagaccaagctgttataagttacaatcatgatacacaagtataatgagaggaa |
25581608 |
T |
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| Q |
111 |
aggcatgaaagtcataatatgtgctgtgctgtacgaagtatagtatagaaaatgtcattgaaggattgaattgaaagacagggataatcaattaggtgaa |
210 |
Q |
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| T |
25581607 |
aggcatgaaagtcataatatgtgctgtgctgtacgaagtatagtatagaaaatgtcattgaaggattaaattgaaagacagggataatcaattaggtgaa |
25581508 |
T |
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| Q |
211 |
ttgaaggatggtagagggtcggttgggtagttccaagcattgnnnnnnnnggcgactctattaagaccatttaaatcacataaatgcaagagtaattgag |
310 |
Q |
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| T |
25581507 |
ttgaaggatggtagagggtcggttgggtagttccaagcattgaaaaaaaaggcgactctattaagaccatttaaatcacataaatgcaagagtaattgag |
25581408 |
T |
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| Q |
311 |
acagttgagaataatgaaggagatattttgttccctatg |
349 |
Q |
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| T |
25581407 |
acagttgagaataatgaaggagatattttgttccctatg |
25581369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 267 - 337
Target Start/End: Original strand, 42895401 - 42895471
Alignment:
| Q |
267 |
tctattaagaccatttaaatcacataaatgcaagagtaattgagacagttgagaataatgaaggagatatt |
337 |
Q |
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| T |
42895401 |
tctattaagaccatttaaatcacataaatgcaagagtaattgagacagttgagcataatgacggagatatt |
42895471 |
T |
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