View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6273_low_1 (Length: 507)
Name: NF6273_low_1
Description: NF6273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6273_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 53982868 - 53982371
Alignment:
| Q |
1 |
ctacaaaatttcagcaagagaagatgtttaataagtctaacaacacaaatctaactaaggatttctaacgataatttgattaaagacacaaatttcaaga |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53982868 |
ctacaaaatttcagcaagagaagatgcttaataagtctaacaacacaaatctaactaaggatttctaacgataatttgattaaagacacaaatttcaaga |
53982769 |
T |
|
| Q |
101 |
aggtaaactgcaagaaaattggggggtgcacgggcgggtggggagaggggtgtatctagagttaactaggtacttttttactttagtgtnnnnnnn-tta |
199 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
53982768 |
aggtaaactgcaagaaaattgcggggtgcacgggcgggtggggagagaggtgtatctagagttaactaggtacttttgtactttagtgtaaaaaaaatta |
53982669 |
T |
|
| Q |
200 |
ataacgtnnnnnnntgaaggataatacaagaaaattaacatgctaagagttgaagaaagaaaacatataaaatggagttttagatgagaagtgggataaa |
299 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
53982668 |
ataacgtaaaaaaatgaaggataatacaagaaaattaacatgctaagagttgaagaaagaaaacatataaaatggaattttagatgagaagtgggataaa |
53982569 |
T |
|
| Q |
300 |
aaattgtcaaattcaggatgtgtgataaaattaattgcagatccatcataagaattagatatgttcttcataaggatttatatttggttcatccaaaaat |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
53982568 |
aaattgtcaaattcaggatgtgtgataaaattaattgcagatccatcataagaattag--atgttcttcataaggatttatatttggttcatccaaaaat |
53982471 |
T |
|
| Q |
400 |
ttagaggagcaaaactagcttttacctcaatcaacaattgaatattacaatttagtcttttttcttaaaaacaaactaaattgttatttatacctatgct |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53982470 |
ttagaggagcaaaactagcttttacctcaatcaacaattgaatattacaatttagtcttttttcttaaaaacaaactaaattgttatttatacctatgct |
53982371 |
T |
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