View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6273_low_10 (Length: 337)
Name: NF6273_low_10
Description: NF6273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6273_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 51 - 318
Target Start/End: Original strand, 48370127 - 48370394
Alignment:
| Q |
51 |
tttattcatcatacttaaactgaattccttctgcttccattcactactatagtacataagcactattttaataaagttatattcccaattaggctctcat |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48370127 |
tttattcatcatacttaaactgaattccttctgcttccattcactactatagtacataagtactattttaataaagttatattcccaattaggctctcat |
48370226 |
T |
|
| Q |
151 |
tttactcttacatcacataatatgctcatttgaccaagaccgataaaaaagagggaagcacacatgctattcaggagagaagctgtttttctaacaaggc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48370227 |
tttactcttacatcacataatatgctcatttgaccaagaccgataaaaaagagggaagcacacatgctattcaggagagaagctgtttttctaacaaggc |
48370326 |
T |
|
| Q |
251 |
aaagaagcatctattccttgtaggcacatgaacaacaaattattatgagtttccatatcaactcatag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48370327 |
aaagaagcatctattccttgtaggcacatgaacaacaaattattatgagtttccatatcaactcatag |
48370394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 4374443 - 4374362
Alignment:
| Q |
51 |
tttattcatcatacttaaactgaattccttctgcttccattcactactatagtacataagcactattttaataaagttatat |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4374443 |
tttattcatcatacttaaactgaattccttctgcttccattcactactatagtacataagtactattttaataaagttatat |
4374362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University