View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6273_low_19 (Length: 252)
Name: NF6273_low_19
Description: NF6273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6273_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 44948014 - 44948252
Alignment:
| Q |
1 |
tagaagacttgtgtcatgactttgattaaacaatctaaaacacaattggaatgtaagatcagacagctccctgattgcataactacatacaatccatttt |
100 |
Q |
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| T |
44948014 |
tagaagacttgtgtcatgactttgattaaacaatctaaaacacaattggaatgtaagatcagacagctccctgattgcataactacatacaatccatttt |
44948113 |
T |
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| Q |
101 |
catagactatacttagcatcaatatagtgtgtattttctaactttttagttgcttttggcttaagaatcattaaatccaatgaaaatcttgcttggaaga |
200 |
Q |
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| T |
44948114 |
catagactatacttagcatcaatatagtgtgtattttctaactttctagttgcttttggcttaagaatcattaaatccaatgaaaatcttgcttggaaga |
44948213 |
T |
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| Q |
201 |
cgcttcatactatatttgcatcctcttctgatttcacct |
239 |
Q |
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| T |
44948214 |
cgcttcatactatatttgcatcctcttctgatttcacct |
44948252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 11450624 - 11450559
Alignment:
| Q |
174 |
aatccaatgaaaatcttgcttggaagacgcttcatactatatttgcatcctcttctgatttcacct |
239 |
Q |
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| T |
11450624 |
aatccaatgaaaatcttgcctggaagatccttcatactatctttgcatcctcctctgatttcacct |
11450559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 11450696 - 11450640
Alignment:
| Q |
67 |
ctccctgattgcataactacatacaatccattttcatag-actatacttagcatcaa |
122 |
Q |
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| T |
11450696 |
ctccttgattgcataactacatataatccattttcatagtactacacttagcatcaa |
11450640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 11450750 - 11450707
Alignment:
| Q |
26 |
ttaaacaatctaaaacacaattggaatgtaagatcagacagctc |
69 |
Q |
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||||| ||||||||||||| | |||||||||||||||||||||| |
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| T |
11450750 |
ttaaataatctaaaacacagtcggaatgtaagatcagacagctc |
11450707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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