View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6273_low_2 (Length: 491)
Name: NF6273_low_2
Description: NF6273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6273_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 13 - 476
Target Start/End: Original strand, 5557410 - 5557873
Alignment:
| Q |
13 |
aatatatattccatagagataatataaaatgaaatatgaatgatccaactagtctctatctaccttcatgctaatgttccttttcttaacacatatttct |
112 |
Q |
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| T |
5557410 |
aatatatattccatagagataatataaaatgaaatatgaatgatccaactagtctctatctaccttcatgctaatgttccttttattaacacatctttc- |
5557508 |
T |
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| Q |
113 |
aacacttccaaaa-aacacttaggaatgtcatcccatttccattagtcacataaatcacctttgtgacaaagggaacatcatgagtgtcaaaatcatcaa |
211 |
Q |
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| T |
5557509 |
aacacttccaaaaaaacacttaggattgtcatcccatttccattagtcacataaatcacctttgtgacaaagggaacatcatcagtgtcaacatcatcaa |
5557608 |
T |
|
| Q |
212 |
acttttggaggagaagcatgcaattgttatcatatgcacgcaaaatctctagtttgagaaagataaagaaagctaaagttgtaaaaattattatgcaaga |
311 |
Q |
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| T |
5557609 |
acttttggaggagaagcatgcaattgttatcatatgcatgcaaaatctctagcttgaaaaagataaagaaagctaaagttgtaaaaatcattacgtaaaa |
5557708 |
T |
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| Q |
312 |
tgagtactcaatttttgcatgagtttttgcaactttagcttcatattatctttctcaagctggagcttttgttctaaagaagcaatatgatcaaagttga |
411 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||| |
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| T |
5557709 |
tgagtactcaacttttgtatgagtttttgcaactttagcttcatattatctttctcaagctgaagtttttgttctaaagaagcgatatgatcaaagttga |
5557808 |
T |
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| Q |
412 |
ggcaggtatggaaagacattcgaactcttctagacttgctataatagttcttcctgggttgattt |
476 |
Q |
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| T |
5557809 |
ggcaggtatgaaaaaacattcaaactcttctagacttgctataatagttcttcctgggttgattt |
5557873 |
T |
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