View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6273_low_20 (Length: 251)
Name: NF6273_low_20
Description: NF6273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6273_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 47068813 - 47069049
Alignment:
| Q |
1 |
tgattttgggcttgcaaaacttttaatgccagaccaaaccagaacattcacgatggtcagagggacaagagggtacatggccccggagtggaacaagcac |
100 |
Q |
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| T |
47068813 |
tgattttgggcttgcaaaacttttaatgccagaccaaaccagaacattcacgatggtcagagggacaagagggtacatggccccggagtggaacaagaac |
47068912 |
T |
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| Q |
101 |
atggcaatatcagtgaaaacagatgtttatagctatggaatagtgctgttagaaatcttatgttgcagaagaaacctagatgttaatgtgttggaacctg |
200 |
Q |
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| T |
47068913 |
gtggcaatatcagtgaaaacagatgtttatagctatggaatagtgctgttggaaatcttatgttgcagaagaaacctagatgttaatgtgttggaacctg |
47069012 |
T |
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| Q |
201 |
aggagattcttcttgctggttggacttataagtgctt |
237 |
Q |
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| T |
47069013 |
aggagattcttcttgctggttggacttataagtgctt |
47069049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 2 - 235
Target Start/End: Complemental strand, 47075516 - 47075283
Alignment:
| Q |
2 |
gattttgggcttgcaaaacttttaatgccagaccaaaccagaacattcacgatggtcagagggacaagagggtacatggccccggagtggaacaagcaca |
101 |
Q |
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| T |
47075516 |
gattttggtcttgcaaaacttttaatgccggaccaaaccagaactttcacggttgttagagggacacggggctacatggctccagaatggaacatgaacg |
47075417 |
T |
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| Q |
102 |
tggcaatatcagtgaaaacagatgtttatagctatggaatagtgctgttagaaatcttatgttgcagaagaaacctagatgttaatgtgttggaacctga |
201 |
Q |
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| T |
47075416 |
tgccaatatcacttaaggcagatgtttatagctatggaataatgttgtttgaaattttatgttgcagaagaaacctagatgttaatgtgttggaacctga |
47075317 |
T |
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| Q |
202 |
ggagattcttcttgctggttggacttataagtgc |
235 |
Q |
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| T |
47075316 |
ggagattcttctctctggttgggcttataagtgc |
47075283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 47086931 - 47086865
Alignment:
| Q |
164 |
tgcagaagaaacctagatgttaatgtgttggaacctgaggagattcttcttgctggttggacttata |
230 |
Q |
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| T |
47086931 |
tgcagaagaaacctagatgttaatgtgttggaacctgaggagattcttctctctggttgggcttata |
47086865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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