View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6273_low_23 (Length: 249)
Name: NF6273_low_23
Description: NF6273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6273_low_23 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 21 - 249
Target Start/End: Original strand, 238341 - 238565
Alignment:
| Q |
21 |
tgtacttcccagtgacattctttttctacaaaagcaagcatcatctcgttgttgatcgtaaacgacaaaatagtgaaattcagtattaaatctaaatcca |
120 |
Q |
| |
|
||||||||||||||||| |||||| | |||||| || ||||||||||| ||||||||||||| |||| ||| ||||||||||||||||||||||||| |
|
|
| T |
238341 |
tgtacttcccagtgacaatcttttccgacaaaa--aa--atcatctcgtttttgatcgtaaacgtcaaagaagtaaaattcagtattaaatctaaatcca |
238436 |
T |
|
| Q |
121 |
caaaagtataaggtcgttttaattaaggtaccagacctaaaaacaaagttgtaagattctccaaaatttagtgtttgagctccaatatcatgatctttgt |
220 |
Q |
| |
|
|||||||||||||| | || || || |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
238437 |
caaaagtataaggtagattcaactacggtaccaggcctaaaaacgaagttgtaagattctccaaaatttagtgtttgagctccaatatcatgatctttgt |
238536 |
T |
|
| Q |
221 |
ccttactgtggacaacgagcttaagacca |
249 |
Q |
| |
|
|||||| ||||||| |||||||| |||| |
|
|
| T |
238537 |
ccttacagtggacagtgagcttaacacca |
238565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 21 - 249
Target Start/End: Complemental strand, 228559 - 228335
Alignment:
| Q |
21 |
tgtacttcccagtgacattctttttctacaaaagcaagcatcatctcgttgttgatcgtaaacgacaaaatagtgaaattcagtattaaatctaaatcca |
120 |
Q |
| |
|
|||||||||||| |||| |||||| | |||||| || ||||||||||| ||||||||||||| |||| || ||||||||||||||||||||||||| |
|
|
| T |
228559 |
tgtacttcccagcgacaatcttttccgacaaaa--aa--atcatctcgtttttgatcgtaaacgtcaaagatgtaaaattcagtattaaatctaaatcca |
228464 |
T |
|
| Q |
121 |
caaaagtataaggtcgttttaattaaggtaccagacctaaaaacaaagttgtaagattctccaaaatttagtgtttgagctccaatatcatgatctttgt |
220 |
Q |
| |
|
|||||||||||||| | || || || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
228463 |
caaaagtataaggtagattcaactatggtaccaggcctaaaaacaaagttgtaagattctccaaaatttagtgtttgagctccaatatcatgatctttgt |
228364 |
T |
|
| Q |
221 |
ccttactgtggacaacgagcttaagacca |
249 |
Q |
| |
|
|||||| ||||||| |||||||| |||| |
|
|
| T |
228363 |
ccttacagtggacagtgagcttaacacca |
228335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University